SNP Detail For rs10864728
1.Mapping Information
Human SNP ID rs10864728
Human chromosome chr1
Human SNP position 230169168
Pig chromosome chr14
Pig SNP position 64867844
2.Annotation Information
PubMed ID25961943
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25961943
StudyThe impact of low-frequency and rare variants on lipid levels.
Disease/TraitTriglycerides
Initial sampleup to 62,166 European ancestry individuals
Replication sampleNA
Region1q42.13
Chromosome idchr1
Chromosome position230169168
Reported geneGALNT2
Mapped geneGALNT2
Upstream gene id
Downstream gene id
SNP gene ids2590
Upstream gene distance
Downstream gene distance
SNP risk allelers10864728-A
SNPsrs10864728
Merged
SNP id current10864728
Contextintron_variant
Intergenic0
Allele frequency0.39
P value0.0000000000000005
Pvalue mlog15.3010299956639
P value text
Or beta0.052
%95 Ci[0.04-0.064] s.d. increase
PlatformAffymetrix, Illumina, Perlegen [up to 9657952] (imputed)
CNVN
Mapped traittriglyceride measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004530
Study accessionGCST002897