Human SNP ID | rs10863790 |
---|---|
Human chromosome | chr1 |
Human SNP position | 209814702 |
Pig chromosome | chr9 |
Pig SNP position | 146231705 |
PubMed ID | 20436469 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/20436469 |
Study | A genome-wide association study of cleft lip with and without cleft palate identifies risk variants near MAFB and ABCA4. |
Disease/Trait | Cleft lip |
Initial sample | 825 European ancestry trios, 1,038 Asian ancestry trios |
Replication sample | 2,194 Asian ancestry family members, 322 South Asian ancestry family members, 3,830 European ancestry family members, 1,769 South and Central American ancestry family members |
Region | 1q32.2 |
Chromosome id | chr1 |
Chromosome position | 209814702 |
Reported gene | IRF6 |
Mapped gene | IRF6 - DIEXF |
Upstream gene id | 3664 |
Downstream gene id | 27042 |
SNP gene ids | |
Upstream gene distance | 8527 |
Downstream gene distance | 13265 |
SNP risk allele | rs10863790-? |
SNPs | rs10863790 |
Merged | 0 |
SNP id current | 10863790 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.8 |
P value | 0.00000000000001 |
Pvalue mlog | 14 |
P value text | |
Or beta | 1.72 |
%95 Ci | [1.49-1.98] |
Platform | Illumina [589945] |
CNV | N |
Mapped trait | cleft lip |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003959 |
Study accession | GCST000673 |