Human SNP ID | rs10862688 |
---|---|
Human chromosome | chr12 |
Human SNP position | 83529133 |
Pig chromosome | chr5 |
Pig SNP position | 103157437 |
PubMed ID | 25241763 |
---|---|
Journal | Nat Commun |
Link | www.ncbi.nlm.nih.gov/pubmed/25241763 |
Study | Meta-analysis of genome-wide association studies identifies novel loci that influence cupping and the glaucomatous process. |
Disease/Trait | Vertical cup-disc ratio |
Initial sample | 18,963 European ancestry individuals, 2,131 Erasmus Rucphen individuals |
Replication sample | 2,453 Chinese ancestry individuals, 2,026 Indian ancestry individuals, 2,305 Malay ancestry individuals |
Region | 12q21.31 |
Chromosome id | chr12 |
Chromosome position | 83529133 |
Reported gene | TMTC2 |
Mapped gene | LOC105369874 - LOC105369875 |
Upstream gene id | 105369874 |
Downstream gene id | 105369875 |
SNP gene ids | |
Upstream gene distance | 56525 |
Downstream gene distance | 963280 |
SNP risk allele | rs10862688-G |
SNPs | rs10862688 |
Merged | 0 |
SNP id current | 10862688 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 0.00000000001 |
Pvalue mlog | 11 |
P value text | |
Or beta | 0.008 |
%95 Ci | [0.0060-0.0100] unit increase |
Platform | Affymetrix, Illumina [~ 2500000] (imputed) |
CNV | N |
Mapped trait | optic disc size measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004832 |
Study accession | GCST002626 |