SNP Detail For rs10861342
1.Mapping Information
Human SNP ID rs10861342
Human chromosome chr12
Human SNP position 105065019
Pig chromosome chr5
Pig SNP position 82916181
2.Annotation Information
PubMed ID23382691
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23382691
StudyLoci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.
Disease/TraitIgG glycosylation
Initial sample2,247 European ancestry individuals
Replication sampleNA
Region12q23.3
Chromosome idchr12
Chromosome position105065019
Reported geneNR
Mapped geneALDH1L2
Upstream gene id
Downstream gene id
SNP gene ids160428
Upstream gene distance
Downstream gene distance
SNP risk allelers10861342-C
SNPsrs10861342
Merged0
SNP id current10861342
Contextintron_variant
Intergenic0
Allele frequency0.099068749529359
P value0.000002
Pvalue mlog5.69897000433601
P value text(IGP51)
Or beta0.2456
%95 Ci[0.14-0.35] unit increase
PlatformIllumina [~ 2500000] (imputed)
CNVN
Mapped traitserum IgG glycosylation measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005193
Study accessionGCST001848