SNP Detail For rs10860392
1.Mapping Information
Human SNP ID rs10860392
Human chromosome chr12
Human SNP position 99104409
Pig chromosome chr5
Pig SNP position 89002858
2.Annotation Information
PubMed ID23453885
JournalLancet
Linkwww.ncbi.nlm.nih.gov/pubmed/23453885
StudyIdentification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.
Disease/TraitAutism spectrum disorder, attention deficit-hyperactivity disorder, bipolar disorder, major depressive disorder, and schizophrenia (combined)
Initial sample6,990 European ancestry Bipolar disorder cases, 9,227 European ancestry Major depressive disorder cases, 9,379 European ancestry Schizophrenia cases, 161 European ancestry Autism spectrum disorder cases, 4,788 European ancestry Autism spectrum disorder tr
Replication sampleNA
Region12q23.1
Chromosome idchr12
Chromosome position99104409
Reported geneANKS1B
Mapped geneLOC101928937, ANKS1B
Upstream gene id
Downstream gene id
SNP gene ids101928937, 56899
Upstream gene distance
Downstream gene distance
SNP risk allelers10860392-T
SNPsrs10860392
Merged0
SNP id current10860392
Contextintron_variant
Intergenic0
Allele frequency
P value0.000002
Pvalue mlog5.69897000433601
P value text(Modelling analysis)
Or beta1.06
%95 Ci[1.04-1.09]
PlatformNR [1252901] (imputed)
CNVN
Mapped traitattention deficit hyperactivity disorder, unipolar depression, schizophrenia, autism spectrum disorder, bipolar disorder
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003888, http://www.ebi.ac.uk/efo/EFO_0003761, http://www.ebi.ac.uk/efo/EFO_0000692, http://www.ebi.ac.uk/efo/EFO_0003756, http://www.ebi.ac.uk/efo/EFO_0000289
Study accessionGCST001877