SNP Detail For rs10859871
1.Mapping Information
Human SNP ID rs10859871
Human chromosome chr12
Human SNP position 95318100
Pig chromosome chr5
Pig SNP position 92216416
2.Annotation Information
PubMed ID23104006
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23104006
StudyGenome-wide association meta-analysis identifies new endometriosis risk loci.
Disease/TraitEndometriosis
Initial sample3,181 European ancestry cases, 8,075 European ancestry controls, 1,423 Japanese ancestry cases, 1,318 Japanese ancestry controls
Replication sample1,044 Japanese ancestry, 4,017 Japanese ancestry controls
Region12q22
Chromosome idchr12
Chromosome position95318100
Reported geneVEZT
Mapped geneMIR3685 - LOC105369916
Upstream gene id100500802
Downstream gene id105369916
SNP gene ids
Upstream gene distance8116
Downstream gene distance19470
SNP risk allelers10859871-C
SNPsrs10859871
Merged0
SNP id current10859871
Contextintron_variant
Intergenic1
Allele frequency0.295
P value0.0000000000005
Pvalue mlog12.3010299956639
P value text
Or beta1.2
%95 Ci[1.14-1.26]
PlatformIllumina [407632]
CNVN
Mapped traitendometriosis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001065
Study accessionGCST001720