Human SNP ID | rs10859871 |
---|---|
Human chromosome | chr12 |
Human SNP position | 95318100 |
Pig chromosome | chr5 |
Pig SNP position | 92216416 |
PubMed ID | 23104006 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23104006 |
Study | Genome-wide association meta-analysis identifies new endometriosis risk loci. |
Disease/Trait | Endometriosis |
Initial sample | 3,181 European ancestry cases, 8,075 European ancestry controls, 1,423 Japanese ancestry cases, 1,318 Japanese ancestry controls |
Replication sample | 1,044 Japanese ancestry, 4,017 Japanese ancestry controls |
Region | 12q22 |
Chromosome id | chr12 |
Chromosome position | 95318100 |
Reported gene | VEZT |
Mapped gene | MIR3685 - LOC105369916 |
Upstream gene id | 100500802 |
Downstream gene id | 105369916 |
SNP gene ids | |
Upstream gene distance | 8116 |
Downstream gene distance | 19470 |
SNP risk allele | rs10859871-C |
SNPs | rs10859871 |
Merged | 0 |
SNP id current | 10859871 |
Context | intron_variant |
Intergenic | 1 |
Allele frequency | 0.295 |
P value | 0.0000000000005 |
Pvalue mlog | 12.3010299956639 |
P value text | |
Or beta | 1.2 |
%95 Ci | [1.14-1.26] |
Platform | Illumina [407632] |
CNV | N |
Mapped trait | endometriosis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001065 |
Study accession | GCST001720 |