SNP Detail For rs10854398
1.Mapping Information
Human SNP ID rs10854398
Human chromosome chr21
Human SNP position 39649825
Pig chromosome chr13
Pig SNP position 213586149
2.Annotation Information
PubMed ID21041247
JournalAm J Psychiatry
Linkwww.ncbi.nlm.nih.gov/pubmed/21041247
StudyGenome-wide association study of suicide attempts in mood disorder patients.
Disease/TraitSuicide risk
Initial sample3,117 European ancestry Bipolar disorder cases, 1,273 European ancestry Major depressive disorder cases
Replication sample2,698 European ancestry Bipolar disorder cases, 1,649 Major depressive disorder cases
Region21q22.2
Chromosome idchr21
Chromosome position39649825
Reported geneIGSF5, B3GALT5
Mapped geneLOC105372805, B3GALT5
Upstream gene id
Downstream gene id
SNP gene ids105372805, 10317
Upstream gene distance
Downstream gene distance
SNP risk allelers10854398-C
SNPsrs10854398
Merged0
SNP id current10854398
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.000006
Pvalue mlog5.22184874961635
P value text
Or beta1.178
%95 Ci
PlatformAffymetrix [1922309] (imputed)
CNVN
Mapped traitmental or behavioural disorder, attempted suicide
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000677, http://www.ebi.ac.uk/efo/EFO_0004321
Study accessionGCST000854