Human SNP ID | rs10854398 |
---|---|
Human chromosome | chr21 |
Human SNP position | 39649825 |
Pig chromosome | chr13 |
Pig SNP position | 213586149 |
PubMed ID | 21041247 |
---|---|
Journal | Am J Psychiatry |
Link | www.ncbi.nlm.nih.gov/pubmed/21041247 |
Study | Genome-wide association study of suicide attempts in mood disorder patients. |
Disease/Trait | Suicide risk |
Initial sample | 3,117 European ancestry Bipolar disorder cases, 1,273 European ancestry Major depressive disorder cases |
Replication sample | 2,698 European ancestry Bipolar disorder cases, 1,649 Major depressive disorder cases |
Region | 21q22.2 |
Chromosome id | chr21 |
Chromosome position | 39649825 |
Reported gene | IGSF5, B3GALT5 |
Mapped gene | LOC105372805, B3GALT5 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 105372805, 10317 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs10854398-C |
SNPs | rs10854398 |
Merged | 0 |
SNP id current | 10854398 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.000006 |
Pvalue mlog | 5.22184874961635 |
P value text | |
Or beta | 1.178 |
%95 Ci | |
Platform | Affymetrix [1922309] (imputed) |
CNV | N |
Mapped trait | mental or behavioural disorder, attempted suicide |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000677, http://www.ebi.ac.uk/efo/EFO_0004321 |
Study accession | GCST000854 |