SNP Detail For rs10852932
1.Mapping Information
Human SNP ID rs10852932
Human chromosome chr17
Human SNP position 2240166
Pig chromosome chr12
Pig SNP position 50190445
2.Annotation Information
PubMed ID19584346
JournalJAMA
Linkwww.ncbi.nlm.nih.gov/pubmed/19584346
StudyGenetic variants associated with cardiac structure and function: a meta-analysis and replication of genome-wide association data.
Disease/TraitAortic root size
Initial sample12,612 European ancestry individuals
Replication sample4,094 European ancestry individuals
Region17p13.3
Chromosome idchr17
Chromosome position2240166
Reported geneSMG6, SRR, TSR1, SGSM2
Mapped geneSMG6
Upstream gene id
Downstream gene id
SNP gene ids23293
Upstream gene distance
Downstream gene distance
SNP risk allelers10852932-T
SNPsrs10852932
Merged0
SNP id current10852932
Context5_prime_UTR_variant
Intergenic0
Allele frequency0.36
P value0.00000000002
Pvalue mlog10.698970004336
P value text
Or beta0.03
%95 Ci[0.02-0.04] cm increase
PlatformAffymetrix, Illumina [~ 2500000] (imputed)
CNVN
Mapped traitaortic root size
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005037
Study accessionGCST000442