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SNP Detail For rs10846617
1.Mapping Information
| Human SNP ID | rs10846617 |
|---|---|
| Human chromosome | chr12 |
| Human SNP position | 124177585 |
| Pig chromosome | chr14 |
| Pig SNP position | 30631050 |
2.Annotation Information
| PubMed ID | 25631615 |
|---|---|
| Journal | Genet Epidemiol |
| Link | www.ncbi.nlm.nih.gov/pubmed/25631615 |
| Study | Meta-analysis of Genome-Wide Association Studies Identifies Novel Loci Associated With Optic Disc Morphology. |
| Disease/Trait | Optic cup area |
| Initial sample | 15,087 European ancestry individuals, 2,131 Erasmus Rucphen Family individuals, 2,363 Chinese ancestry individuals, 2,225 Malay ancestry individuals, 2,025 Indian ancestry individuals |
| Replication sample | NA |
| Region | 12q24.31 |
| Chromosome id | chr12 |
| Chromosome position | 124177585 |
| Reported gene | FAM101A |
| Mapped gene | ZNF664-FAM101A |
| Upstream gene id | |
| Downstream gene id | |
| SNP gene ids | 100533183 |
| Upstream gene distance | |
| Downstream gene distance | |
| SNP risk allele | rs10846617-C |
| SNPs | rs10846617 |
| Merged | 0 |
| SNP id current | 10846617 |
| Context | intron_variant |
| Intergenic | 0 |
| Allele frequency | 0.44 |
| P value | 0.0000000007 |
| Pvalue mlog | 9.15490195998574 |
| P value text | |
| Or beta | 0.014 |
| %95 Ci | [0.010-0.018] unit decrease |
| Platform | Affymetrix, Illumina [2500000] (imputed) |
| CNV | N |
| Mapped trait | optic cup area measurement |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0006940 |
| Study accession | GCST002764 |
| PubMed ID | 25631615 |
| Journal | Genet Epidemiol |
| Link | www.ncbi.nlm.nih.gov/pubmed/25631615 |
| Study | Meta-analysis of Genome-Wide Association Studies Identifies Novel Loci Associated With Optic Disc Morphology. |
| Disease/Trait | Optic cup area |
| Initial sample | 15,087 European ancestry individuals, 2,131 Erasmus Rucphen Family individuals, 2,363 Chinese ancestry individuals, 2,225 Malay ancestry individuals, 2,025 Indian ancestry individuals |
| Replication sample | NA |
| Region | 12q24.31 |
| Chromosome id | chr12 |
| Chromosome position | 124177585 |
| Reported gene | FAM101A |
| Mapped gene | ZNF664-FAM101A |
| Upstream gene id | |
| Downstream gene id | |
| SNP gene ids | 100533183 |
| Upstream gene distance | |
| Downstream gene distance | |
| SNP risk allele | rs10846617-C |
| SNPs | rs10846617 |
| Merged | 0 |
| SNP id current | 10846617 |
| Context | intron_variant |
| Intergenic | 0 |
| Allele frequency | 0.44 |
| P value | 0.0000002 |
| Pvalue mlog | 6.69897000433601 |
| P value text | (EA) |
| Or beta | 0.014 |
| %95 Ci | [0.0081-0.0199] unit decrease |
| Platform | Affymetrix, Illumina [2500000] (imputed) |
| CNV | N |
| Mapped trait | optic cup area measurement |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0006940 |
| Study accession | GCST002764 |
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and Xi'an University of Technology ©2014-2017 All Rights Reserved.
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