SNP Detail For rs10842262
1.Mapping Information
Human SNP ID rs10842262
Human chromosome chr12
Human SNP position 24031610
Pig chromosome chr5
Pig SNP position 53348491
2.Annotation Information
PubMed ID22197933
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/22197933
StudyA genome-wide association study in Chinese men identifies three risk loci for non-obstructive azoospermia.
Disease/TraitNon-obstructive azoospermia
Initial sample981 Han Chinese ancestry cases, 1,657 Han Chinese ancestry controls
Replication sample1,946 Han Chinese ancestry cases, 4,077 Han Chinese ancestry controls
Region12p12.1
Chromosome idchr12
Chromosome position24031610
Reported geneSOX5
Mapped geneSOX5
Upstream gene id
Downstream gene id
SNP gene ids6660
Upstream gene distance
Downstream gene distance
SNP risk allelers10842262-?
SNPsrs10842262
Merged0
SNP id current10842262
Contextintergenic_variant
Intergenic0
Allele frequencyNR
P value0.000000002
Pvalue mlog8.69897000433601
P value text
Or beta1.23
%95 Ci[1.15-1.32]
PlatformAffymetrix [587347]
CNVN
Mapped traitazoospermia
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000279
Study accessionGCST001362