Human SNP ID | rs10842262 |
---|---|
Human chromosome | chr12 |
Human SNP position | 24031610 |
Pig chromosome | chr5 |
Pig SNP position | 53348491 |
PubMed ID | 22197933 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/22197933 |
Study | A genome-wide association study in Chinese men identifies three risk loci for non-obstructive azoospermia. |
Disease/Trait | Non-obstructive azoospermia |
Initial sample | 981 Han Chinese ancestry cases, 1,657 Han Chinese ancestry controls |
Replication sample | 1,946 Han Chinese ancestry cases, 4,077 Han Chinese ancestry controls |
Region | 12p12.1 |
Chromosome id | chr12 |
Chromosome position | 24031610 |
Reported gene | SOX5 |
Mapped gene | SOX5 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 6660 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs10842262-? |
SNPs | rs10842262 |
Merged | 0 |
SNP id current | 10842262 |
Context | intergenic_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.000000002 |
Pvalue mlog | 8.69897000433601 |
P value text | |
Or beta | 1.23 |
%95 Ci | [1.15-1.32] |
Platform | Affymetrix [587347] |
CNV | N |
Mapped trait | azoospermia |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000279 |
Study accession | GCST001362 |