SNP Detail For rs10841530
1.Mapping Information
Human SNP ID rs10841530
Human chromosome chr12
Human SNP position 20446178
Pig chromosome chr5
Pig SNP position 55890894
2.Annotation Information
PubMed ID24376456
JournalFront Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/24376456
StudyGene-alcohol interactions identify several novel blood pressure loci including a promising locus near SLC16A9.
Disease/TraitSystolic blood pressure (alcohol consumption interaction)
Initial sampleup to 6,882 European ancestry individuals
Replication sampleNA
Region12p12.2
Chromosome idchr12
Chromosome position20446178
Reported genePDE3A
Mapped genePDE3A
Upstream gene id
Downstream gene id
SNP gene ids5139
Upstream gene distance
Downstream gene distance
SNP risk allelers10841530-G
SNPsrs10841530
Merged0
SNP id current10841530
Contextintron_variant
Intergenic0
Allele frequency0.56
P value0.0000006
Pvalue mlog6.22184874961635
P value text(drinks/week)
Or beta0.155
%95 Ci[0.098-0.212] unit increase
PlatformAffymetrix [2500000] (imputed)
CNVN
Mapped traitsystolic blood pressure, alcohol drinking
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0006335, http://www.ebi.ac.uk/efo/EFO_0004329
Study accessionGCST002307