Human SNP ID | rs10841530 |
---|---|
Human chromosome | chr12 |
Human SNP position | 20446178 |
Pig chromosome | chr5 |
Pig SNP position | 55890894 |
PubMed ID | 24376456 |
---|---|
Journal | Front Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/24376456 |
Study | Gene-alcohol interactions identify several novel blood pressure loci including a promising locus near SLC16A9. |
Disease/Trait | Systolic blood pressure (alcohol consumption interaction) |
Initial sample | up to 6,882 European ancestry individuals |
Replication sample | NA |
Region | 12p12.2 |
Chromosome id | chr12 |
Chromosome position | 20446178 |
Reported gene | PDE3A |
Mapped gene | PDE3A |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 5139 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs10841530-G |
SNPs | rs10841530 |
Merged | 0 |
SNP id current | 10841530 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.56 |
P value | 0.0000006 |
Pvalue mlog | 6.22184874961635 |
P value text | (drinks/week) |
Or beta | 0.155 |
%95 Ci | [0.098-0.212] unit increase |
Platform | Affymetrix [2500000] (imputed) |
CNV | N |
Mapped trait | systolic blood pressure, alcohol drinking |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0006335, http://www.ebi.ac.uk/efo/EFO_0004329 |
Study accession | GCST002307 |