SNP Detail For rs10828151
1.Mapping Information
Human SNP ID rs10828151
Human chromosome chr10
Human SNP position 20922826
Pig chromosome chr10
Pig SNP position 59585592
2.Annotation Information
PubMed ID23509962
JournalBMC Med Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23509962
StudyA genome-wide search for common SNP x SNP interactions on the risk of venous thrombosis.
Disease/TraitVenous thromboembolism (SNP x SNP interaction)
Initial sample411 European ancestry cases, 1,228 European ancestry controls
Replication sample1,542 European ancestry cases, 1,110 European ancestry controls
Region1q25.3 x 10p12.31
Chromosome idchr1 x 10
Chromosome position184099374 x 20922826
Reported geneNR x NR
Mapped geneTSEN15 - LOC102724830 x NEBL
Upstream gene id
Downstream gene id
SNP gene ids
Upstream gene distance
Downstream gene distance
SNP risk allelers971572-? x rs10828151-?
SNPsrs971572 x rs10828151
Merged0
SNP id current
Contextintergenic_variant x intron_variant
Intergenic
Allele frequency
P value0.000000009
Pvalue mlog8.04575749056067
P value text
Or beta2.381
%95 Ci[NR]
PlatformIllumina [291872]
CNVN
Mapped traitvenous thromboembolism
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004286
Study accessionGCST001913