Human SNP ID | rs10825269 |
---|---|
Human chromosome | chr10 |
Human SNP position | 54195850 |
Pig chromosome | chr14 |
Pig SNP position | 104565914 |
PubMed ID | 24797007 |
---|---|
Journal | Am J Gastroenterol |
Link | www.ncbi.nlm.nih.gov/pubmed/24797007 |
Study | Genome-wide association study identifies two novel genomic regions in irritable bowel syndrome. |
Disease/Trait | Irritable bowel syndrome |
Initial sample | Up to 172 European ancestry cases, 1,398 European ancestry controls |
Replication sample | Up to 485 European ancestry cases, up to 716 European ancestry controls |
Region | 10q21.1 |
Chromosome id | chr10 |
Chromosome position | 54195850 |
Reported gene | PCDH15 |
Mapped gene | PCDH15 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 65217 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs10825269-T |
SNPs | rs10825269 |
Merged | 0 |
SNP id current | 10825269 |
Context | missense_variant |
Intergenic | 0 |
Allele frequency | 0.12 |
P value | 0.000005 |
Pvalue mlog | 5.30102999566398 |
P value text | |
Or beta | 1.55 |
%95 Ci | [1.28-1.87] |
Platform | Affymetrix [~ 2500000] (imputed) |
CNV | N |
Mapped trait | irritable bowel syndrome |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000555 |
Study accession | GCST002436 |