SNP Detail For rs10825269
1.Mapping Information
Human SNP ID rs10825269
Human chromosome chr10
Human SNP position 54195850
Pig chromosome chr14
Pig SNP position 104565914
2.Annotation Information
PubMed ID24797007
JournalAm J Gastroenterol
Linkwww.ncbi.nlm.nih.gov/pubmed/24797007
StudyGenome-wide association study identifies two novel genomic regions in irritable bowel syndrome.
Disease/TraitIrritable bowel syndrome
Initial sampleUp to 172 European ancestry cases, 1,398 European ancestry controls
Replication sampleUp to 485 European ancestry cases, up to 716 European ancestry controls
Region10q21.1
Chromosome idchr10
Chromosome position54195850
Reported genePCDH15
Mapped genePCDH15
Upstream gene id
Downstream gene id
SNP gene ids65217
Upstream gene distance
Downstream gene distance
SNP risk allelers10825269-T
SNPsrs10825269
Merged0
SNP id current10825269
Contextmissense_variant
Intergenic0
Allele frequency0.12
P value0.000005
Pvalue mlog5.30102999566398
P value text
Or beta1.55
%95 Ci[1.28-1.87]
PlatformAffymetrix [~ 2500000] (imputed)
CNVN
Mapped traitirritable bowel syndrome
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000555
Study accessionGCST002436