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SNP Detail For rs10813951
1.Mapping Information
| Human SNP ID | rs10813951 |
|---|---|
| Human chromosome | chr9 |
| Human SNP position | 33128023 |
| Pig chromosome | chr10 |
| Pig SNP position | 37614370 |
2.Annotation Information
| PubMed ID | 23382691 |
|---|---|
| Journal | PLoS Genet |
| Link | www.ncbi.nlm.nih.gov/pubmed/23382691 |
| Study | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. |
| Disease/Trait | IgG glycosylation |
| Initial sample | 2,247 European ancestry individuals |
| Replication sample | NA |
| Region | 9p21.1 |
| Chromosome id | chr9 |
| Chromosome position | 33128023 |
| Reported gene | NR |
| Mapped gene | B4GALT1 |
| Upstream gene id | |
| Downstream gene id | |
| SNP gene ids | 2683 |
| Upstream gene distance | |
| Downstream gene distance | |
| SNP risk allele | rs10813951-G |
| SNPs | rs10813951 |
| Merged | 0 |
| SNP id current | 10813951 |
| Context | intron_variant |
| Intergenic | 0 |
| Allele frequency | 0.262554376171352 |
| P value | 0.000000001 |
| Pvalue mlog | 9 |
| P value text | (IGP39) |
| Or beta | 0.2169 |
| %95 Ci | [0.15-0.29] unit increase |
| Platform | Illumina [~ 2500000] (imputed) |
| CNV | N |
| Mapped trait | serum IgG glycosylation measurement |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005193 |
| Study accession | GCST001848 |
| PubMed ID | 23382691 |
| Journal | PLoS Genet |
| Link | www.ncbi.nlm.nih.gov/pubmed/23382691 |
| Study | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. |
| Disease/Trait | IgG glycosylation |
| Initial sample | 2,247 European ancestry individuals |
| Replication sample | NA |
| Region | 9p21.1 |
| Chromosome id | chr9 |
| Chromosome position | 33128023 |
| Reported gene | NR |
| Mapped gene | B4GALT1 |
| Upstream gene id | |
| Downstream gene id | |
| SNP gene ids | 2683 |
| Upstream gene distance | |
| Downstream gene distance | |
| SNP risk allele | rs10813951-G |
| SNPs | rs10813951 |
| Merged | 0 |
| SNP id current | 10813951 |
| Context | intron_variant |
| Intergenic | 0 |
| Allele frequency | 0.262743396083667 |
| P value | 0.0000000005 |
| Pvalue mlog | 9.30102999566398 |
| P value text | (IGP40) |
| Or beta | 0.2193 |
| %95 Ci | [0.15-0.29] unit increase |
| Platform | Illumina [~ 2500000] (imputed) |
| CNV | N |
| Mapped trait | serum IgG glycosylation measurement |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005193 |
| Study accession | GCST001848 |
| PubMed ID | 23382691 |
| Journal | PLoS Genet |
| Link | www.ncbi.nlm.nih.gov/pubmed/23382691 |
| Study | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. |
| Disease/Trait | IgG glycosylation |
| Initial sample | 2,247 European ancestry individuals |
| Replication sample | NA |
| Region | 9p21.1 |
| Chromosome id | chr9 |
| Chromosome position | 33128023 |
| Reported gene | NR |
| Mapped gene | B4GALT1 |
| Upstream gene id | |
| Downstream gene id | |
| SNP gene ids | 2683 |
| Upstream gene distance | |
| Downstream gene distance | |
| SNP risk allele | rs10813951-G |
| SNPs | rs10813951 |
| Merged | 0 |
| SNP id current | 10813951 |
| Context | intron_variant |
| Intergenic | 0 |
| Allele frequency | 0.262989649130629 |
| P value | 0.00000007 |
| Pvalue mlog | 7.15490195998574 |
| P value text | (IGP69) |
| Or beta | 0.1926 |
| %95 Ci | [0.12-0.26] unit increase |
| Platform | Illumina [~ 2500000] (imputed) |
| CNV | N |
| Mapped trait | serum IgG glycosylation measurement |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005193 |
| Study accession | GCST001848 |
| PubMed ID | 23382691 |
| Journal | PLoS Genet |
| Link | www.ncbi.nlm.nih.gov/pubmed/23382691 |
| Study | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. |
| Disease/Trait | IgG glycosylation |
| Initial sample | 2,247 European ancestry individuals |
| Replication sample | NA |
| Region | 9p21.1 |
| Chromosome id | chr9 |
| Chromosome position | 33128023 |
| Reported gene | NR |
| Mapped gene | B4GALT1 |
| Upstream gene id | |
| Downstream gene id | |
| SNP gene ids | 2683 |
| Upstream gene distance | |
| Downstream gene distance | |
| SNP risk allele | rs10813951-G |
| SNPs | rs10813951 |
| Merged | 0 |
| SNP id current | 10813951 |
| Context | intron_variant |
| Intergenic | 0 |
| Allele frequency | 0.262766006241641 |
| P value | 0.0000004 |
| Pvalue mlog | 6.39794000867203 |
| P value text | (IGP75) |
| Or beta | 0.1812 |
| %95 Ci | [0.11-0.25] unit increase |
| Platform | Illumina [~ 2500000] (imputed) |
| CNV | N |
| Mapped trait | serum IgG glycosylation measurement |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005193 |
| Study accession | GCST001848 |
| PubMed ID | 23382691 |
| Journal | PLoS Genet |
| Link | www.ncbi.nlm.nih.gov/pubmed/23382691 |
| Study | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. |
| Disease/Trait | IgG glycosylation |
| Initial sample | 2,247 European ancestry individuals |
| Replication sample | NA |
| Region | 9p21.1 |
| Chromosome id | chr9 |
| Chromosome position | 33128023 |
| Reported gene | NR |
| Mapped gene | B4GALT1 |
| Upstream gene id | |
| Downstream gene id | |
| SNP gene ids | 2683 |
| Upstream gene distance | |
| Downstream gene distance | |
| SNP risk allele | rs10813951-G |
| SNPs | rs10813951 |
| Merged | 0 |
| SNP id current | 10813951 |
| Context | intron_variant |
| Intergenic | 0 |
| Allele frequency | 0.262743396083667 |
| P value | 0.000003 |
| Pvalue mlog | 5.52287874528033 |
| P value text | (IGP76) |
| Or beta | 0.1669 |
| %95 Ci | [0.097-0.237] unit decrease |
| Platform | Illumina [~ 2500000] (imputed) |
| CNV | N |
| Mapped trait | serum IgG glycosylation measurement |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005193 |
| Study accession | GCST001848 |
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