Human SNP ID | rs10807828 |
---|---|
Human chromosome | chr7 |
Human SNP position | 25528235 |
Pig chromosome | chr18 |
Pig SNP position | 51588557 |
PubMed ID | 25778476 |
---|---|
Journal | Mol Psychiatry |
Link | www.ncbi.nlm.nih.gov/pubmed/25778476 |
Study | A novel Alzheimer disease locus located near the gene encoding tau protein. |
Disease/Trait | Alzheimer__s disease in APOE e4- carriers |
Initial sample | 7,184 cases, 26,968 controls |
Replication sample | 718 European ancestry cases, 1,699 European ancestry controls |
Region | 7p15.2 |
Chromosome id | chr7 |
Chromosome position | 25528235 |
Reported gene | NPVF, UBA52P1 |
Mapped gene | LOC105375196 - LOC646588 |
Upstream gene id | 105375196 |
Downstream gene id | 646588 |
SNP gene ids | |
Upstream gene distance | 31503 |
Downstream gene distance | 126974 |
SNP risk allele | rs10807828-C |
SNPs | rs10807828 |
Merged | 0 |
SNP id current | 10807828 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.51 |
P value | 0.000007 |
Pvalue mlog | 5.15490195998574 |
P value text | |
Or beta | 1.098901 |
%95 Ci | [1.05-1.15] |
Platform | NR [NR] |
CNV | N |
Mapped trait | Alzheimers disease |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000249 |
Study accession | GCST002817 |