SNP Detail For rs10807828
1.Mapping Information
Human SNP ID rs10807828
Human chromosome chr7
Human SNP position 25528235
Pig chromosome chr18
Pig SNP position 51588557
2.Annotation Information
PubMed ID25778476
JournalMol Psychiatry
Linkwww.ncbi.nlm.nih.gov/pubmed/25778476
StudyA novel Alzheimer disease locus located near the gene encoding tau protein.
Disease/TraitAlzheimer__s disease in APOE e4- carriers
Initial sample7,184 cases, 26,968 controls
Replication sample718 European ancestry cases, 1,699 European ancestry controls
Region7p15.2
Chromosome idchr7
Chromosome position25528235
Reported geneNPVF, UBA52P1
Mapped geneLOC105375196 - LOC646588
Upstream gene id105375196
Downstream gene id646588
SNP gene ids
Upstream gene distance31503
Downstream gene distance126974
SNP risk allelers10807828-C
SNPsrs10807828
Merged0
SNP id current10807828
Contextintergenic_variant
Intergenic1
Allele frequency0.51
P value0.000007
Pvalue mlog5.15490195998574
P value text
Or beta1.098901
%95 Ci[1.05-1.15]
PlatformNR [NR]
CNVN
Mapped traitAlzheimers disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000249
Study accessionGCST002817