SNP Detail For rs10806425
1.Mapping Information
Human SNP ID rs10806425
Human chromosome chr6
Human SNP position 90216893
Pig chromosome chr1
Pig SNP position 65196966
2.Annotation Information
PubMed ID20190752
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/20190752
StudyMultiple common variants for celiac disease influencing immune gene expression.
Disease/TraitCeliac disease
Initial sample4,533 European ancestry cases, 10,750 European ancestry controls
Replication sample4,918 European ancestry cases, 5,684 European ancestry controls
Region6q15
Chromosome idchr6
Chromosome position90216893
Reported geneMAP3K7, BACH2
Mapped geneBACH2
Upstream gene id
Downstream gene id
SNP gene ids60468
Upstream gene distance
Downstream gene distance
SNP risk allelers10806425-A
SNPsrs10806425
Merged0
SNP id current10806425
Contextintron_variant
Intergenic0
Allele frequency0.4
P value0.0000000004
Pvalue mlog9.39794000867203
P value text
Or beta1.13
%95 Ci[1.09-1.17]
PlatformIllumina [292387]
CNVN
Mapped traitceliac disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001060
Study accessionGCST000612