Human SNP ID | rs10800098 |
---|---|
Human chromosome | chr1 |
Human SNP position | 165439858 |
Pig chromosome | chr4 |
Pig SNP position | 93024309 |
PubMed ID | 19754311 |
---|---|
Journal | J Infect Dis |
Link | www.ncbi.nlm.nih.gov/pubmed/19754311 |
Study | Genomewide association study of a rapid progression cohort identifies new susceptibility alleles for AIDS (ANRS Genomewide Association Study 03). |
Disease/Trait | AIDS |
Initial sample | 85 European ancestry cases, 2,049 European ancestry controls |
Replication sample | NA |
Region | 1q23.3 |
Chromosome id | chr1 |
Chromosome position | 165439858 |
Reported gene | RXRG |
Mapped gene | RXRG |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 6258 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs10800098-A |
SNPs | rs10800098 |
Merged | 0 |
SNP id current | 10800098 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.05 |
P value | 0.000004 |
Pvalue mlog | 5.39794000867203 |
P value text | |
Or beta | 3.29 |
%95 Ci | [2.08-5.20] |
Platform | Illumina [291119] |
CNV | N |
Mapped trait | AIDS |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000765 |
Study accession | GCST000487 |