SNP Detail For rs10800098
1.Mapping Information
Human SNP ID rs10800098
Human chromosome chr1
Human SNP position 165439858
Pig chromosome chr4
Pig SNP position 93024309
2.Annotation Information
PubMed ID19754311
JournalJ Infect Dis
Linkwww.ncbi.nlm.nih.gov/pubmed/19754311
StudyGenomewide association study of a rapid progression cohort identifies new susceptibility alleles for AIDS (ANRS Genomewide Association Study 03).
Disease/TraitAIDS
Initial sample85 European ancestry cases, 2,049 European ancestry controls
Replication sampleNA
Region1q23.3
Chromosome idchr1
Chromosome position165439858
Reported geneRXRG
Mapped geneRXRG
Upstream gene id
Downstream gene id
SNP gene ids6258
Upstream gene distance
Downstream gene distance
SNP risk allelers10800098-A
SNPsrs10800098
Merged0
SNP id current10800098
Contextintron_variant
Intergenic0
Allele frequency0.05
P value0.000004
Pvalue mlog5.39794000867203
P value text
Or beta3.29
%95 Ci[2.08-5.20]
PlatformIllumina [291119]
CNVN
Mapped traitAIDS
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000765
Study accessionGCST000487