SNP Detail For rs10792832
1.Mapping Information
Human SNP ID rs10792832
Human chromosome chr11
Human SNP position 86156833
Pig chromosome chr9
Pig SNP position 22265308
2.Annotation Information
PubMed ID24162737
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/24162737
StudyMeta-analysis of 74,046 individuals identifies 11 new susceptibility loci for Alzheimer__s disease.
Disease/TraitAlzheimer__s disease (late onset)
Initial sample17,008 European ancestry cases, 37,154 European ancestry controls
Replication sample8,572 European ancestry cases, 11,312 European ancestry controls
Region11q14.2
Chromosome idchr11
Chromosome position86156833
Reported genePICALM
Mapped genePICALM - FNTAP1
Upstream gene id8301
Downstream gene id283226
SNP gene ids
Upstream gene distance86952
Downstream gene distance38298
SNP risk allelers10792832-G
SNPsrs10792832
Merged0
SNP id current10792832
Contextdownstream_gene_variant
Intergenic1
Allele frequency0.642
P value9E-26
Pvalue mlog25.0457574905606
P value text
Or beta1.1494
%95 Ci[1.12-1.18]
PlatformIllumina [7055881] (imputed)
CNVN
Mapped traitAlzheimers disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000249
Study accessionGCST002245
PubMed ID25778476
JournalMol Psychiatry
Linkwww.ncbi.nlm.nih.gov/pubmed/25778476
StudyA novel Alzheimer disease locus located near the gene encoding tau protein.
Disease/TraitAlzheimer__s disease in APOE e4+ carriers
Initial sample10,352 cases, 9,207 controls
Replication sample1,250 European ancestry cases, 536 European ancestry controls
Region11q14.2
Chromosome idchr11
Chromosome position86156833
Reported genePICALM
Mapped genePICALM - FNTAP1
Upstream gene id8301
Downstream gene id283226
SNP gene ids
Upstream gene distance86952
Downstream gene distance38298
SNP risk allelers10792832-G
SNPsrs10792832
Merged0
SNP id current10792832
Contextdownstream_gene_variant
Intergenic1
Allele frequency0.65
P value0.000004
Pvalue mlog5.39794000867203
P value text
Or beta1.14
%95 Ci[1.08-1.19]
PlatformNR [NR]
CNVN
Mapped traitAlzheimers disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000249
Study accessionGCST002813