Human SNP ID | rs10792830 |
---|---|
Human chromosome | chr11 |
Human SNP position | 86127766 |
Pig chromosome | chr9 |
Pig SNP position | 22230706 |
PubMed ID | 22005930 |
---|---|
Journal | Mol Psychiatry |
Link | www.ncbi.nlm.nih.gov/pubmed/22005930 |
Study | Genome-wide association study of Alzheimer__s disease with psychotic symptoms. |
Disease/Trait | Psychosis and Alzheimer__s disease |
Initial sample | 1,039 European ancestry cases with psychosis, 5,659 European ancestry controls, 260 European, African American and Native American ancestry cases with psychosis from 264 families |
Replication sample | NA |
Region | 11q14.2 |
Chromosome id | chr11 |
Chromosome position | 86127766 |
Reported gene | AP003097.1 |
Mapped gene | PICALM - FNTAP1 |
Upstream gene id | 8301 |
Downstream gene id | 283226 |
SNP gene ids | |
Upstream gene distance | 57885 |
Downstream gene distance | 67365 |
SNP risk allele | rs10792830-? |
SNPs | rs10792830 |
Merged | 0 |
SNP id current | 10792830 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.44 |
P value | 0.000006 |
Pvalue mlog | 5.22184874961635 |
P value text | |
Or beta | 1.25 |
%95 Ci | [NR] |
Platform | Illumina [1847262] (imputed) |
CNV | N |
Mapped trait | Alzheimers disease, psychotic symptoms |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000249, http://www.ebi.ac.uk/efo/EFO_0005940 |
Study accession | GCST001285 |