SNP Detail For rs10792830
1.Mapping Information
Human SNP ID rs10792830
Human chromosome chr11
Human SNP position 86127766
Pig chromosome chr9
Pig SNP position 22230706
2.Annotation Information
PubMed ID22005930
JournalMol Psychiatry
Linkwww.ncbi.nlm.nih.gov/pubmed/22005930
StudyGenome-wide association study of Alzheimer__s disease with psychotic symptoms.
Disease/TraitPsychosis and Alzheimer__s disease
Initial sample1,039 European ancestry cases with psychosis, 5,659 European ancestry controls, 260 European, African American and Native American ancestry cases with psychosis from 264 families
Replication sampleNA
Region11q14.2
Chromosome idchr11
Chromosome position86127766
Reported geneAP003097.1
Mapped genePICALM - FNTAP1
Upstream gene id8301
Downstream gene id283226
SNP gene ids
Upstream gene distance57885
Downstream gene distance67365
SNP risk allelers10792830-?
SNPsrs10792830
Merged0
SNP id current10792830
Contextintergenic_variant
Intergenic1
Allele frequency0.44
P value0.000006
Pvalue mlog5.22184874961635
P value text
Or beta1.25
%95 Ci[NR]
PlatformIllumina [1847262] (imputed)
CNVN
Mapped traitAlzheimers disease, psychotic symptoms
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000249, http://www.ebi.ac.uk/efo/EFO_0005940
Study accessionGCST001285