SNP Detail For rs10789285
1.Mapping Information
Human SNP ID rs10789285
Human chromosome chr1
Human SNP position 69322799
Pig chromosome chr6
Pig SNP position 132999336
2.Annotation Information
PubMed ID25939698
JournalNat Commun
Linkwww.ncbi.nlm.nih.gov/pubmed/25939698
StudyEnhanced meta-analysis and replication studies identify five new psoriasis susceptibility loci.
Disease/TraitPsoriasis
Initial sample3,994 European ancestry cases, 7,699 European ancestry controls
Replication sample6,268 European ancestry cases, 14,172 European ancestry controls, 5,033 cases, 5,707 controls
Region1p31.1
Chromosome idchr1
Chromosome position69322799
Reported geneLRRC7
Mapped geneLOC105378786 - LOC105378788
Upstream gene id105378786
Downstream gene id105378788
SNP gene ids
Upstream gene distance73312
Downstream gene distance108452
SNP risk allelers10789285-G
SNPsrs10789285
Merged0
SNP id current10789285
Contextintergenic_variant
Intergenic1
Allele frequency0.25
P value0.000000003
Pvalue mlog8.52287874528033
P value text
Or beta1.12
%95 Ci[NR]
PlatformIllumina [696365] (imputed)
CNVN
Mapped traitpsoriasis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000676
Study accessionGCST002889