Human SNP ID | rs10789285 |
---|---|
Human chromosome | chr1 |
Human SNP position | 69322799 |
Pig chromosome | chr6 |
Pig SNP position | 132999336 |
PubMed ID | 25939698 |
---|---|
Journal | Nat Commun |
Link | www.ncbi.nlm.nih.gov/pubmed/25939698 |
Study | Enhanced meta-analysis and replication studies identify five new psoriasis susceptibility loci. |
Disease/Trait | Psoriasis |
Initial sample | 3,994 European ancestry cases, 7,699 European ancestry controls |
Replication sample | 6,268 European ancestry cases, 14,172 European ancestry controls, 5,033 cases, 5,707 controls |
Region | 1p31.1 |
Chromosome id | chr1 |
Chromosome position | 69322799 |
Reported gene | LRRC7 |
Mapped gene | LOC105378786 - LOC105378788 |
Upstream gene id | 105378786 |
Downstream gene id | 105378788 |
SNP gene ids | |
Upstream gene distance | 73312 |
Downstream gene distance | 108452 |
SNP risk allele | rs10789285-G |
SNPs | rs10789285 |
Merged | 0 |
SNP id current | 10789285 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.25 |
P value | 0.000000003 |
Pvalue mlog | 8.52287874528033 |
P value text | |
Or beta | 1.12 |
%95 Ci | [NR] |
Platform | Illumina [696365] (imputed) |
CNV | N |
Mapped trait | psoriasis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000676 |
Study accession | GCST002889 |