SNP Detail For rs10788309
1.Mapping Information
Human SNP ID rs10788309
Human chromosome chr10
Human SNP position 84030720
Pig chromosome chr14
Pig SNP position 92118467
2.Annotation Information
PubMed ID26584805
JournalGenes Nutr
Linkwww.ncbi.nlm.nih.gov/pubmed/26584805
StudyA genome-wide association study of n-3 and n-6 plasma fatty acids in a Singaporean Chinese population.
Disease/TraitPlasma omega-6 polyunsaturated fatty acid levels (gamma-linolenic acid)
Initial sample717 Singaporean Chinese ancestry myocardial infarction cases, 644 Singaporean Chinese ancestry controls
Replication sampleNA
Region10q23.1
Chromosome idchr10
Chromosome position84030720
Reported geneNR
Mapped geneLOC105378399 - GHITM
Upstream gene id105378399
Downstream gene id27069
SNP gene ids
Upstream gene distance27236
Downstream gene distance108709
SNP risk allelers10788309-G
SNPsrs10788309
Merged
SNP id current10788309
Contextintergenic_variant
Intergenic1
Allele frequency0.4384
P value0.000004
Pvalue mlog5.39794000867203
P value text
Or beta0.1001
%95 Ci[0.057-0.143] unit increase
PlatformIllumina [up to 1980188] (imputed)
CNVN
Mapped trait
Mapped trait URI
Study accessionGCST003238