SNP Detail For rs10784502
1.Mapping Information
Human SNP ID rs10784502
Human chromosome chr12
Human SNP position 65950030
Pig chromosome chr5
Pig SNP position 33500503
2.Annotation Information
PubMed ID22504417
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/22504417
StudyIdentification of common variants associated with human hippocampal and intracranial volumes.
Disease/TraitBrain structure
Initial sample2,020 European ancestry neuropsychiatric disorder cases, 5,775 European ancestry controls
Replication sample599 European ancestry neuropsychiatric disorder cases, 11,915 European ancestry controls, 143 European ancestry and African American neuropsychiatric disorder cases, 94 European ancestry and African American controls, 605 Hispanic controls
Region12q14.3
Chromosome idchr12
Chromosome position65950030
Reported geneHMGA2
Mapped geneHMGA2
Upstream gene id
Downstream gene id
SNP gene ids8091
Upstream gene distance
Downstream gene distance
SNP risk allelers10784502-C
SNPsrs10784502
Merged0
SNP id current10784502
Contextintron_variant
Intergenic0
Allele frequency0.49
P value0.000000000001
Pvalue mlog12
P value text(Intracranial volume)
Or beta9006.71
%95 Ci[6525.78-11487.64] mm3 increase
PlatformAffymetrix, Illumina [NR] (imputed)
CNVN
Mapped traitintra cranial volume
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004886
Study accessionGCST001481