Human SNP ID | rs10784502 |
---|---|
Human chromosome | chr12 |
Human SNP position | 65950030 |
Pig chromosome | chr5 |
Pig SNP position | 33500503 |
PubMed ID | 22504417 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/22504417 |
Study | Identification of common variants associated with human hippocampal and intracranial volumes. |
Disease/Trait | Brain structure |
Initial sample | 2,020 European ancestry neuropsychiatric disorder cases, 5,775 European ancestry controls |
Replication sample | 599 European ancestry neuropsychiatric disorder cases, 11,915 European ancestry controls, 143 European ancestry and African American neuropsychiatric disorder cases, 94 European ancestry and African American controls, 605 Hispanic controls |
Region | 12q14.3 |
Chromosome id | chr12 |
Chromosome position | 65950030 |
Reported gene | HMGA2 |
Mapped gene | HMGA2 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 8091 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs10784502-C |
SNPs | rs10784502 |
Merged | 0 |
SNP id current | 10784502 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.49 |
P value | 0.000000000001 |
Pvalue mlog | 12 |
P value text | (Intracranial volume) |
Or beta | 9006.71 |
%95 Ci | [6525.78-11487.64] mm3 increase |
Platform | Affymetrix, Illumina [NR] (imputed) |
CNV | N |
Mapped trait | intra cranial volume |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004886 |
Study accession | GCST001481 |