SNP Detail For rs10784285
1.Mapping Information
Human SNP ID rs10784285
Human chromosome chr12
Human SNP position 62164533
Pig chromosome chr5
Pig SNP position 29329034
2.Annotation Information
PubMed ID24554482
JournalJ Neurovirol
Linkwww.ncbi.nlm.nih.gov/pubmed/24554482
StudyGenome-wide association study of peripheral neuropathy with D-drug-containing regimens in AIDS Clinical Trials Group protocol 384.
Disease/TraitResponse to anti-retroviral therapy (ddI/d4T) in HIV-1 infection (Grade 1 peripheral neuropathy)
Initial sample40 European ancestry cases, 37 African American cases, 13 Hispanic cases, 85 European ancestry controls, 49 African American controls, 30 Hispanic controls
Replication sampleNA
Region12q14.1
Chromosome idchr12
Chromosome position62164533
Reported geneFAM19A2
Mapped geneFAM19A2
Upstream gene id
Downstream gene id
SNP gene ids338811
Upstream gene distance
Downstream gene distance
SNP risk allelers10784285-?
SNPsrs10784285
Merged0
SNP id current10784285
Contextintron_variant
Intergenic0
Allele frequency
P value0.000009
Pvalue mlog5.04575749056067
P value text(AA)
Or beta4.1
%95 Ci[NR]
PlatformIllumina [936149]
CNVN
Mapped traitresponse to reverse transcriptase inhibitor, HIV-1 infection, peripheral neuropathy
Mapped trait URIhttp://purl.obolibrary.org/obo/GO_0061479, http://www.ebi.ac.uk/efo/EFO_0000180, http://www.ebi.ac.uk/efo/EFO_0003100
Study accessionGCST002366