SNP Detail For rs1077834
1.Mapping Information
Human SNP ID rs1077834
Human chromosome chr15
Human SNP position 58431280
Pig chromosome chr1
Pig SNP position 125668376
2.Annotation Information
PubMed ID20139978
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/20139978
StudyGenome-wide association study of hematological and biochemical traits in a Japanese population.
Disease/TraitHematological and biochemical traits
Initial sampleUp to 14,402 Japanese individuals
Replication sampleNA
Region15q21.3
Chromosome idchr15
Chromosome position58431280
Reported geneLIPC
Mapped geneLIPC, LOC102724766
Upstream gene id
Downstream gene id
SNP gene ids3990, 102724766
Upstream gene distance
Downstream gene distance
SNP risk allelers1077834-T
SNPsrs1077834
Merged0
SNP id current1077834
Contextintron_variant
Intergenic0
Allele frequency0.49
P value0.00000000000001
Pvalue mlog14
P value text(HDL)
Or beta0.14
%95 Ci[0.1-0.18] unit decrease
PlatformIllumina [561583]
CNVN
Mapped traithigh density lipoprotein cholesterol measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004612
Study accessionGCST000583