Human SNP ID | rs1077834 |
---|---|
Human chromosome | chr15 |
Human SNP position | 58431280 |
Pig chromosome | chr1 |
Pig SNP position | 125668376 |
PubMed ID | 20139978 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/20139978 |
Study | Genome-wide association study of hematological and biochemical traits in a Japanese population. |
Disease/Trait | Hematological and biochemical traits |
Initial sample | Up to 14,402 Japanese individuals |
Replication sample | NA |
Region | 15q21.3 |
Chromosome id | chr15 |
Chromosome position | 58431280 |
Reported gene | LIPC |
Mapped gene | LIPC, LOC102724766 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 3990, 102724766 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs1077834-T |
SNPs | rs1077834 |
Merged | 0 |
SNP id current | 1077834 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.49 |
P value | 0.00000000000001 |
Pvalue mlog | 14 |
P value text | (HDL) |
Or beta | 0.14 |
%95 Ci | [0.1-0.18] unit decrease |
Platform | Illumina [561583] |
CNV | N |
Mapped trait | high density lipoprotein cholesterol measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004612 |
Study accession | GCST000583 |