Human SNP ID | rs10759102 |
---|---|
Human chromosome | chr9 |
Human SNP position | 9910123 |
Pig chromosome | chr1 |
Pig SNP position | 237000630 |
PubMed ID | 22837378 |
---|---|
Journal | Am J Respir Crit Care Med |
Link | www.ncbi.nlm.nih.gov/pubmed/22837378 |
Study | Genome-wide association studies identify CHRNA5/3 and HTR4 in the development of airflow obstruction. |
Disease/Trait | Airflow obstruction |
Initial sample | up to 3,368 European ancestry cases, up to 29,507 European ancestry controls |
Replication sample | 331 European ancestry cases, 2,550 European ancestry controls |
Region | 9p23 |
Chromosome id | chr9 |
Chromosome position | 9910123 |
Reported gene | PTPRD |
Mapped gene | PTPRD |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 5789 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs10759102-? |
SNPs | rs10759102 |
Merged | 0 |
SNP id current | 10759102 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.67 |
P value | 0.000001 |
Pvalue mlog | 6 |
P value text | (FEV1 65%) |
Or beta | 1.23 |
%95 Ci | [NR] |
Platform | Affymetrix, Illumina [up to 2500000] (imputed) |
CNV | N |
Mapped trait | pulmonary function measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003892 |
Study accession | GCST001621 |