SNP Detail For rs10742752
1.Mapping Information
Human SNP ID rs10742752
Human chromosome chr11
Human SNP position 45416824
Pig chromosome chr2
Pig SNP position 18489873
2.Annotation Information
PubMed ID25673413
JournalNature
Linkwww.ncbi.nlm.nih.gov/pubmed/25673413
StudyGenetic studies of body mass index yield new insights for obesity biology.
Disease/TraitBody mass index
Initial sampleup to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals
Replication sampleup to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828
Region11p11.2
Chromosome idchr11
Chromosome position45416824
Reported geneSYT13
Mapped geneLOC399886 - LOC105376654
Upstream gene id399886
Downstream gene id105376654
SNP gene ids
Upstream gene distance28316
Downstream gene distance114178
SNP risk allelers10742752-C
SNPsrs10742752
Merged0
SNP id current10742752
Contextintron_variant
Intergenic1
Allele frequency0.612
P value0.000007
Pvalue mlog5.15490195998574
P value text(EA)
Or beta0.014
%95 Ci[0.008-0.0202] kg/m2 increase
PlatformAffymetrix, Illumina [2550021]
CNVN
Mapped traitbody mass index
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004340
Study accessionGCST002783
PubMed ID25673413
JournalNature
Linkwww.ncbi.nlm.nih.gov/pubmed/25673413
StudyGenetic studies of body mass index yield new insights for obesity biology.
Disease/TraitBody mass index
Initial sampleup to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals
Replication sampleup to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828
Region11p11.2
Chromosome idchr11
Chromosome position45416824
Reported geneSYT13
Mapped geneLOC399886 - LOC105376654
Upstream gene id399886
Downstream gene id105376654
SNP gene ids
Upstream gene distance28316
Downstream gene distance114178
SNP risk allelers10742752-C
SNPsrs10742752
Merged0
SNP id current10742752
Contextintron_variant
Intergenic1
Allele frequency0.616
P value0.000007
Pvalue mlog5.15490195998574
P value text
Or beta0.014
%95 Ci[0.0076-0.0194] kg/m2 increase
PlatformAffymetrix, Illumina [2550021]
CNVN
Mapped traitbody mass index
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004340
Study accessionGCST002783