SNP Detail For rs10741780
1.Mapping Information
Human SNP ID rs10741780
Human chromosome chr11
Human SNP position 19578424
Pig chromosome chr2
Pig SNP position 42825090
2.Annotation Information
PubMed ID22174851
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/22174851
StudyGenomewide association study for determinants of HIV-1 acquisition and viral set point in HIV-1 serodiscordant couples with quantified virus exposure.
Disease/TraitHIV-1 susceptibility
Initial sample496 African ancestry cases and 302 African ancestry exposed controls from serodiscordant couples
Replication sampleNA
Region11p15.1
Chromosome idchr11
Chromosome position19578424
Reported geneAC023950.6
Mapped geneNAV2
Upstream gene id
Downstream gene id
SNP gene ids89797
Upstream gene distance
Downstream gene distance
SNP risk allelers10741780-?
SNPsrs10741780
Merged0
SNP id current10741780
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.000006
Pvalue mlog5.22184874961635
P value text
Or beta
%95 Ci
PlatformIllumina [990115]
CNVN
Mapped traitHIV-1 infection, Susceptibility to viral and mycobacterial infections
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000180, http://www.orpha.net/ORDO/Orphanet_391311
Study accessionGCST001353