SNP Detail For rs10740609
1.Mapping Information
Human SNP ID rs10740609
Human chromosome chr10
Human SNP position 55031209
Pig chromosome chr14
Pig SNP position 103714085
2.Annotation Information
PubMed ID20966902
JournalObesity (Silver Spring)
Linkwww.ncbi.nlm.nih.gov/pubmed/20966902
StudyGenome-wide association study of anthropometric traits and evidence of interactions with age and study year in Filipino women.
Disease/TraitWeight
Initial sample1,780 Filipino ancestry females
Replication sampleNA
Region10q21.1
Chromosome idchr10
Chromosome position55031209
Reported genePCDH15
Mapped genePCDH15 - MTRNR2L5
Upstream gene id65217
Downstream gene id100463289
SNP gene ids
Upstream gene distance229918
Downstream gene distance567781
SNP risk allelers10740609-T
SNPsrs10740609
Merged0
SNP id current10740609
Contextintron_variant
Intergenic1
Allele frequency0.07
P value0.000005
Pvalue mlog5.30102999566398
P value text
Or beta3.41
%95 Ci[1.94-4.87] kg increase
PlatformAffymetrix [2073674] (imputed)
CNVN
Mapped traitbody weight
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004338
Study accessionGCST000837