SNP Detail For rs1065853
1.Mapping Information
Human SNP ID rs1065853
Human chromosome chr19
Human SNP position 44909976
Pig chromosome chr6
Pig SNP position 47272798
2.Annotation Information
PubMed ID25961943
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25961943
StudyThe impact of low-frequency and rare variants on lipid levels.
Disease/TraitLDL cholesterol
Initial sampleup 62,166 European ancestry individuals
Replication sampleNA
Region19q13.32
Chromosome idchr19
Chromosome position44909976
Reported geneAPOE
Mapped geneAPOE - APOC1
Upstream gene id348
Downstream gene id341
SNP gene ids
Upstream gene distance581
Downstream gene distance4349
SNP risk allelers1065853-G
SNPsrs1065853
Merged
SNP id current1065853
Contextnon_coding_transcript_exon_variant
Intergenic1
Allele frequency0.93
P value5E-324
Pvalue mlog323.301029995663
P value text
Or beta0.603
%95 Ci[0.58-0.63] s.d. increase
PlatformAffymetrix, Illumina, Perlegen [up to 9657952] (imputed)
CNVN
Mapped traitlow density lipoprotein cholesterol measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004611
Study accessionGCST002898