Human SNP ID | rs1065853 |
---|---|
Human chromosome | chr19 |
Human SNP position | 44909976 |
Pig chromosome | chr6 |
Pig SNP position | 47272798 |
PubMed ID | 25961943 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/25961943 |
Study | The impact of low-frequency and rare variants on lipid levels. |
Disease/Trait | LDL cholesterol |
Initial sample | up 62,166 European ancestry individuals |
Replication sample | NA |
Region | 19q13.32 |
Chromosome id | chr19 |
Chromosome position | 44909976 |
Reported gene | APOE |
Mapped gene | APOE - APOC1 |
Upstream gene id | 348 |
Downstream gene id | 341 |
SNP gene ids | |
Upstream gene distance | 581 |
Downstream gene distance | 4349 |
SNP risk allele | rs1065853-G |
SNPs | rs1065853 |
Merged | |
SNP id current | 1065853 |
Context | non_coding_transcript_exon_variant |
Intergenic | 1 |
Allele frequency | 0.93 |
P value | 5E-324 |
Pvalue mlog | 323.301029995663 |
P value text | |
Or beta | 0.603 |
%95 Ci | [0.58-0.63] s.d. increase |
Platform | Affymetrix, Illumina, Perlegen [up to 9657952] (imputed) |
CNV | N |
Mapped trait | low density lipoprotein cholesterol measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004611 |
Study accession | GCST002898 |