SNP Detail For rs1063355
1.Mapping Information
Human SNP ID rs1063355
Human chromosome chr6
Human SNP position 32659937
Pig chromosome chr7
Pig SNP position 29180592
2.Annotation Information
PubMed ID24837172
JournalGut
Linkwww.ncbi.nlm.nih.gov/pubmed/24837172
StudyGenome-wide association scan in north Indians reveals three novel HLA-independent risk loci for ulcerative colitis.
Disease/TraitUlcerative colitis
Initial sample603 North Indian ancestry cases, 622 North Indian ancestry controls
Replication sample733 North Indian ancestry cases, 1,148 North Indian ancestry controls
Region6p21.32
Chromosome idchr6
Chromosome position32659937
Reported geneHLA-DQB1, HLA-DRA, HLA-DQA1
Mapped geneHLA-DQB1
Upstream gene id
Downstream gene id
SNP gene ids3119
Upstream gene distance
Downstream gene distance
SNP risk allelers1063355-A
SNPsrs1063355
Merged0
SNP id current1063355
Context3_prime_UTR_variant
Intergenic0
Allele frequencyNR
P value0.000002
Pvalue mlog5.69897000433601
P value text
Or beta1.43
%95 Ci[1.23-1.66]
PlatformIllumina [480391]
CNVN
Mapped traitulcerative colitis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000729
Study accessionGCST002453