Human SNP ID | rs1063355 |
---|---|
Human chromosome | chr6 |
Human SNP position | 32659937 |
Pig chromosome | chr7 |
Pig SNP position | 29180592 |
PubMed ID | 24837172 |
---|---|
Journal | Gut |
Link | www.ncbi.nlm.nih.gov/pubmed/24837172 |
Study | Genome-wide association scan in north Indians reveals three novel HLA-independent risk loci for ulcerative colitis. |
Disease/Trait | Ulcerative colitis |
Initial sample | 603 North Indian ancestry cases, 622 North Indian ancestry controls |
Replication sample | 733 North Indian ancestry cases, 1,148 North Indian ancestry controls |
Region | 6p21.32 |
Chromosome id | chr6 |
Chromosome position | 32659937 |
Reported gene | HLA-DQB1, HLA-DRA, HLA-DQA1 |
Mapped gene | HLA-DQB1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 3119 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs1063355-A |
SNPs | rs1063355 |
Merged | 0 |
SNP id current | 1063355 |
Context | 3_prime_UTR_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.000002 |
Pvalue mlog | 5.69897000433601 |
P value text | |
Or beta | 1.43 |
%95 Ci | [1.23-1.66] |
Platform | Illumina [480391] |
CNV | N |
Mapped trait | ulcerative colitis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000729 |
Study accession | GCST002453 |