SNP Detail For rs1059702
1.Mapping Information
Human SNP ID rs1059702
Human chromosome chrX
Human SNP position 154018741
Pig chromosome chrX
Pig SNP position 142289106
2.Annotation Information
PubMed ID26606652
JournalArthritis Rheumatol
Linkwww.ncbi.nlm.nih.gov/pubmed/26606652
StudyGWAS in an Amerindian ancestry population reveals novel systemic lupus erythematosus risk loci and the role of European admixture.
Disease/TraitSystemic lupus erythematosus
Initial sample862 Native American ancestry-enriched North American cases, 531 Native American ancestry-enriched South American cases, 1,973 Native American ancestry-enriched North American controls, 344 Native American ancestry-enriched South American controls
Replication sampleNA
RegionXq28
Chromosome idchrX
Chromosome position154018741
Reported geneIRAK1
Mapped geneIRAK1
Upstream gene id
Downstream gene id
SNP gene ids3654
Upstream gene distance
Downstream gene distance
SNP risk allelers1059702-?
SNPsrs1059702
Merged0
SNP id current1059702
Contextmissense_variant
Intergenic0
Allele frequency0.5
P value0.00000000000008
Pvalue mlog13.096910013008
P value text
Or beta1.724138
%95 Ci[1.47-2.04]
PlatformIllumina [580483] (imputed)
CNVN
Mapped traitsystemic lupus erythematosus
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0002690
Study accessionGCST003252