SNP Detail For rs1056667
1.Mapping Information
Human SNP ID rs1056667
Human chromosome chr6
Human SNP position 26510336
Pig chromosome chr7
Pig SNP position 22307147
2.Annotation Information
PubMed ID23722424
JournalScience
Linkwww.ncbi.nlm.nih.gov/pubmed/23722424
StudyGWAS of 126,559 individuals identifies genetic variants associated with educational attainment.
Disease/TraitEducational attainment
Initial sampleup to 126,559 European ancestry individuals
Replication sampleNA
Region6p22.2
Chromosome idchr6
Chromosome position26510336
Reported geneBTN1A1
Mapped geneBTN1A1
Upstream gene id
Downstream gene id
SNP gene ids696
Upstream gene distance
Downstream gene distance
SNP risk allelers1056667-T
SNPsrs1056667
Merged0
SNP id current1056667
Context3_prime_UTR_variant
Intergenic0
Allele frequency0.538
P value0.00000002
Pvalue mlog7.69897000433601
P value text(Edu Years)
Or beta0.093
%95 Ci[NR] unit increase
PlatformAffymetrix, Illumina, Perlegen [up to 23218963] (imputed)
CNVN
Mapped traitself reported educational attainment
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004784
Study accessionGCST002047
PubMed ID25201988
JournalProc Natl Acad Sci U S A
Linkwww.ncbi.nlm.nih.gov/pubmed/25201988
StudyCommon genetic variants associated with cognitive performance identified using the proxy-phenotype method.
Disease/TraitEducational attainment
Initial sample106,736 European ancestry individuals
Replication sampleNA
Region6p22.2
Chromosome idchr6
Chromosome position26510336
Reported geneintergenic
Mapped geneBTN1A1
Upstream gene id
Downstream gene id
SNP gene ids696
Upstream gene distance
Downstream gene distance
SNP risk allelers1056667-T
SNPsrs1056667
Merged0
SNP id current1056667
Context3_prime_UTR_variant
Intergenic0
Allele frequency0.628
P value0.0000005
Pvalue mlog6.30102999566398
P value text
Or beta0.023
%95 Ci[NR] unit increase
PlatformAffymetrix, Illumina [NR] (imputed)
CNVN
Mapped traitself reported educational attainment
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004784
Study accessionGCST002598