SNP Detail For rs10519410
1.Mapping Information
Human SNP ID rs10519410
Human chromosome chr4
Human SNP position 137213427
Pig chromosome chr8
Pig SNP position 94863812
2.Annotation Information
PubMed ID23719583
JournalRadiother Oncol
Linkwww.ncbi.nlm.nih.gov/pubmed/23719583
StudyGenome-wide association study identifies a region on chromosome 11q14.3 associated with late rectal bleeding following radiation therapy for prostate cancer.
Disease/TraitAdverse response to radiation therapy
Initial sample79 European, African, Asian, and Hispanic ancestry cases, 241 European, African, Asian, and Hispanic ancestry controls
Replication sample107 European, African, Asian, and Hispanic ancestry cases, 671 European, African, Asian, and Hispanic ancestry controls
Region4q28.3
Chromosome idchr4
Chromosome position137213427
Reported geneLOC646316, PCDH18
Mapped geneLOC729307 - STMN1P2
Upstream gene id729307
Downstream gene id100289663
SNP gene ids
Upstream gene distance15060
Downstream gene distance211826
SNP risk allelers10519410-?
SNPsrs10519410
Merged0
SNP id current10519410
Contextupstream_gene_variant
Intergenic1
Allele frequency0.2
P value0.000001
Pvalue mlog6
P value text
Or beta1.5
%95 Ci[1.0-2.3]
PlatformAffymetrix [614453]
CNVN
Mapped traitresponse to radiation
Mapped trait URIhttp://purl.obolibrary.org/obo/GO_0009314
Study accessionGCST002034