Human SNP ID | rs10519410 |
---|---|
Human chromosome | chr4 |
Human SNP position | 137213427 |
Pig chromosome | chr8 |
Pig SNP position | 94863812 |
PubMed ID | 23719583 |
---|---|
Journal | Radiother Oncol |
Link | www.ncbi.nlm.nih.gov/pubmed/23719583 |
Study | Genome-wide association study identifies a region on chromosome 11q14.3 associated with late rectal bleeding following radiation therapy for prostate cancer. |
Disease/Trait | Adverse response to radiation therapy |
Initial sample | 79 European, African, Asian, and Hispanic ancestry cases, 241 European, African, Asian, and Hispanic ancestry controls |
Replication sample | 107 European, African, Asian, and Hispanic ancestry cases, 671 European, African, Asian, and Hispanic ancestry controls |
Region | 4q28.3 |
Chromosome id | chr4 |
Chromosome position | 137213427 |
Reported gene | LOC646316, PCDH18 |
Mapped gene | LOC729307 - STMN1P2 |
Upstream gene id | 729307 |
Downstream gene id | 100289663 |
SNP gene ids | |
Upstream gene distance | 15060 |
Downstream gene distance | 211826 |
SNP risk allele | rs10519410-? |
SNPs | rs10519410 |
Merged | 0 |
SNP id current | 10519410 |
Context | upstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.2 |
P value | 0.000001 |
Pvalue mlog | 6 |
P value text | |
Or beta | 1.5 |
%95 Ci | [1.0-2.3] |
Platform | Affymetrix [614453] |
CNV | N |
Mapped trait | response to radiation |
Mapped trait URI | http://purl.obolibrary.org/obo/GO_0009314 |
Study accession | GCST002034 |