SNP Detail For rs10516173
1.Mapping Information
Human SNP ID rs10516173
Human chromosome chr4
Human SNP position 5151418
Pig chromosome chr8
Pig SNP position 4964071
2.Annotation Information
PubMed ID25461247
JournalPharmacogenet Genomics
Linkwww.ncbi.nlm.nih.gov/pubmed/25461247
StudyGenome-wide association study of virologic response with efavirenz-containing or abacavir-containing regimens in AIDS clinical trials group protocols.
Disease/TraitResponse to abacavir-containing treatment in HIV-1 infection (virologic failure)
Initial sampleUp 346 European ancestry individuals, Up to 265 Black individuals, Up to 175 Hispanic individuals
Replication sampleNA
Region4p16.2
Chromosome idchr4
Chromosome position5151418
Reported geneNR
Mapped geneSTK32B
Upstream gene id
Downstream gene id
SNP gene ids55351
Upstream gene distance
Downstream gene distance
SNP risk allelers10516173-T
SNPsrs10516173
Merged0
SNP id current10516173
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.000005
Pvalue mlog5.30102999566398
P value text(phenotype 2)
Or beta2.85
%95 Ci[NR]
PlatformIllumina [> 8000000] (imputed)
CNVN
Mapped traitHIV-1 infection, virologic response measurement, response to abacavir
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000180, http://www.ebi.ac.uk/efo/EFO_0006906, http://www.ebi.ac.uk/efo/EFO_0006905
Study accessionGCST002769