SNP Detail For rs10515778
1.Mapping Information
Human SNP ID rs10515778
Human chromosome chr5
Human SNP position 159231004
Pig chromosome chr16
Pig SNP position 69984185
2.Annotation Information
PubMed ID25574825
JournalAm J Hum Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25574825
StudyGenome-wide Comparative Analysis of Atopic Dermatitis and Psoriasis Gives Insight into Opposing Genetic Mechanisms.
Disease/TraitInflammatory skin disease
Initial sample2,079 European ancestry atopic dermatitis cases, 4,212 European ancestry psoriasis cases, 11,899 European ancestry controls
Replication sampleNA
Region5q33.3
Chromosome idchr5
Chromosome position159231004
Reported geneCTB-11I22.1
Mapped geneLOC105377682
Upstream gene id
Downstream gene id
SNP gene ids105377682
Upstream gene distance
Downstream gene distance
SNP risk allelers10515778-?
SNPsrs10515778
Merged0
SNP id current10515778
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.00000000000002
Pvalue mlog13.698970004336
P value text(Psoriasis)
Or beta1.29
%95 Ci[1.21鈥?.38]
PlatformAffymetrix, Illumina [~ 5200000]
CNVN
Mapped traitpsoriasis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000676
Study accessionGCST002740