SNP Detail For rs10515260
1.Mapping Information
Human SNP ID rs10515260
Human chromosome chr5
Human SNP position 97740844
Pig chromosome chr2
Pig SNP position 107949796
2.Annotation Information
PubMed ID23518928
JournalMol Endocrinol
Linkwww.ncbi.nlm.nih.gov/pubmed/23518928
StudyTSPYL5 SNPs: association with plasma estradiol concentrations and aromatase expression.
Disease/TraitEstradiol plasma levels (breast cancer)
Initial sample700 European ancestry cases, 50 African ancestry cases, 17 Asian ancestry cases, 5 American Indian ancestry cases
Replication sampleNA
Region5q15
Chromosome idchr5
Chromosome position97740844
Reported geneNR
Mapped geneLINC01340 - LOC105379098
Upstream gene id102546227
Downstream gene id105379098
SNP gene ids
Upstream gene distance69793
Downstream gene distance325945
SNP risk allelers10515260-?
SNPsrs10515260
Merged0
SNP id current10515260
Contextdownstream_gene_variant
Intergenic1
Allele frequency0.035
P value0.0000006
Pvalue mlog6.22184874961635
P value text
Or beta1.913
%95 Ci[1.485-2.463] unit increase
PlatformIllumina [563945]
CNVN
Mapped traitestradiol measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004697
Study accessionGCST001914