Human SNP ID | rs10515260 |
---|---|
Human chromosome | chr5 |
Human SNP position | 97740844 |
Pig chromosome | chr2 |
Pig SNP position | 107949796 |
PubMed ID | 23518928 |
---|---|
Journal | Mol Endocrinol |
Link | www.ncbi.nlm.nih.gov/pubmed/23518928 |
Study | TSPYL5 SNPs: association with plasma estradiol concentrations and aromatase expression. |
Disease/Trait | Estradiol plasma levels (breast cancer) |
Initial sample | 700 European ancestry cases, 50 African ancestry cases, 17 Asian ancestry cases, 5 American Indian ancestry cases |
Replication sample | NA |
Region | 5q15 |
Chromosome id | chr5 |
Chromosome position | 97740844 |
Reported gene | NR |
Mapped gene | LINC01340 - LOC105379098 |
Upstream gene id | 102546227 |
Downstream gene id | 105379098 |
SNP gene ids | |
Upstream gene distance | 69793 |
Downstream gene distance | 325945 |
SNP risk allele | rs10515260-? |
SNPs | rs10515260 |
Merged | 0 |
SNP id current | 10515260 |
Context | downstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.035 |
P value | 0.0000006 |
Pvalue mlog | 6.22184874961635 |
P value text | |
Or beta | 1.913 |
%95 Ci | [1.485-2.463] unit increase |
Platform | Illumina [563945] |
CNV | N |
Mapped trait | estradiol measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004697 |
Study accession | GCST001914 |