SNP Detail For rs10513686
1.Mapping Information
Human SNP ID rs10513686
Human chromosome chr3
Human SNP position 171007753
Pig chromosome chr13
Pig SNP position 118546305
2.Annotation Information
PubMed ID22001757
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/22001757
StudyGenome-wide association study identifies loci influencing concentrations of liver enzymes in plasma.
Disease/TraitLiver enzyme levels (gamma-glutamyl transferase)
Initial sampleUp to 52,350 European ancestry individuals, up to 8,739 Indian Asian ancestry individuals
Replication sampleNA
Region3q26.2
Chromosome idchr3
Chromosome position171007753
Reported geneSLC2A2
Mapped geneSLC2A2
Upstream gene id
Downstream gene id
SNP gene ids6514
Upstream gene distance
Downstream gene distance
SNP risk allelers10513686-A
SNPsrs10513686
Merged0
SNP id current10513686
Contextintron_variant
Intergenic0
Allele frequency0.14
P value0.00000000006
Pvalue mlog10.2218487496163
P value text
Or beta4.9
%95 Ci[4.00-5.70] % increase
PlatformAffymetrix, Illumina, Perlegen [~ 2600000] (imputed)
CNVN
Mapped traitserum gamma-glutamyl transferase measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004532
Study accessionGCST001277