SNP Detail For rs10508196
1.Mapping Information
Human SNP ID rs10508196
Human chromosome chr13
Human SNP position 107827618
Pig chromosome chr11
Pig SNP position 82904874
2.Annotation Information
PubMed ID25208829
JournalGenes Immun
Linkwww.ncbi.nlm.nih.gov/pubmed/25208829
StudyGenome-wide association study of vitamin D levels in children: replication in the Western Australian Pregnancy Cohort (Raine) study.
Disease/TraitVitamin D levels
Initial sample645 European ancestry age 6 individuals, 28 age 6 individuals, 1,073 European ancestry age 14 individuals, 67 age 14 individuals
Replication sampleNA
Region13q33.3
Chromosome idchr13
Chromosome position107827618
Reported geneFAM155A
Mapped geneFAM155A, FAM155A-IT1
Upstream gene id
Downstream gene id
SNP gene ids728215, 100874375
Upstream gene distance
Downstream gene distance
SNP risk allelers10508196-A
SNPsrs10508196
Merged0
SNP id current10508196
Contextintron_variant
Intergenic0
Allele frequency0.11
P value0.000002
Pvalue mlog5.69897000433601
P value text(Age 6)
Or beta1.08
%95 Ci[1.05-1.12] unit increase
PlatformIllumina [2461244] (imputed)
CNVN
Mapped traitvitamin D measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004631
Study accessionGCST002602