Human SNP ID | rs10508196 |
---|---|
Human chromosome | chr13 |
Human SNP position | 107827618 |
Pig chromosome | chr11 |
Pig SNP position | 82904874 |
PubMed ID | 25208829 |
---|---|
Journal | Genes Immun |
Link | www.ncbi.nlm.nih.gov/pubmed/25208829 |
Study | Genome-wide association study of vitamin D levels in children: replication in the Western Australian Pregnancy Cohort (Raine) study. |
Disease/Trait | Vitamin D levels |
Initial sample | 645 European ancestry age 6 individuals, 28 age 6 individuals, 1,073 European ancestry age 14 individuals, 67 age 14 individuals |
Replication sample | NA |
Region | 13q33.3 |
Chromosome id | chr13 |
Chromosome position | 107827618 |
Reported gene | FAM155A |
Mapped gene | FAM155A, FAM155A-IT1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 728215, 100874375 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs10508196-A |
SNPs | rs10508196 |
Merged | 0 |
SNP id current | 10508196 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.11 |
P value | 0.000002 |
Pvalue mlog | 5.69897000433601 |
P value text | (Age 6) |
Or beta | 1.08 |
%95 Ci | [1.05-1.12] unit increase |
Platform | Illumina [2461244] (imputed) |
CNV | N |
Mapped trait | vitamin D measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004631 |
Study accession | GCST002602 |