SNP Detail For rs10507017
1.Mapping Information
Human SNP ID rs10507017
Human chromosome chr12
Human SNP position 92771160
Pig chromosome chr5
Pig SNP position 94494145
2.Annotation Information
PubMed ID26242244
JournalSci Rep
Linkwww.ncbi.nlm.nih.gov/pubmed/26242244
StudyAssociation of chromosome 5q21.3 polymorphisms with the exploratory eye movement dysfunction in schizophrenia.
Disease/TraitExploratory eye movement dysfunction in schizophrenia (responsive search score)
Initial sample128 Han Chinese ancestry cases
Replication sampleNA
Region12q22
Chromosome idchr12
Chromosome position92771160
Reported geneNR
Mapped genePLEKHG7
Upstream gene id
Downstream gene id
SNP gene ids440107
Upstream gene distance
Downstream gene distance
SNP risk allelers10507017-?
SNPsrs10507017
Merged
SNP id current10507017
Context3_prime_UTR_variant
Intergenic0
Allele frequencyNR
P value0.000003
Pvalue mlog5.52287874528033
P value text
Or beta6.212
%95 Ci[3.72-8.7] unit decrease
PlatformIllumina [498648]
CNVN
Mapped traitexploratory eye movement measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0007700
Study accessionGCST003065
PubMed ID26242244
JournalSci Rep
Linkwww.ncbi.nlm.nih.gov/pubmed/26242244
StudyAssociation of chromosome 5q21.3 polymorphisms with the exploratory eye movement dysfunction in schizophrenia.
Disease/TraitExploratory eye movement dysfunction in schizophrenia (number of eye fixations)
Initial sample128 Han Chinese ancestry cases
Replication sampleNA
Region12q22
Chromosome idchr12
Chromosome position92771160
Reported geneNR
Mapped genePLEKHG7
Upstream gene id
Downstream gene id
SNP gene ids440107
Upstream gene distance
Downstream gene distance
SNP risk allelers10507017-?
SNPsrs10507017
Merged
SNP id current10507017
Context3_prime_UTR_variant
Intergenic0
Allele frequencyNR
P value0.000002
Pvalue mlog5.69897000433601
P value text
Or beta17.42
%95 Ci[10.51-24.33] unit decrease
PlatformIllumina [498648]
CNVN
Mapped traitexploratory eye movement measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0007700
Study accessionGCST003068