Human SNP ID | rs1050631 |
---|---|
Human chromosome | chr18 |
Human SNP position | 36114157 |
Pig chromosome | chr6 |
Pig SNP position | 112392870 |
PubMed ID | 23644492 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23644492 |
Study | Genome-wide association study identifies common variants in SLC39A6 associated with length of survival in esophageal squamous-cell carcinoma. |
Disease/Trait | Esophageal squamous cell cancer (length of survival) |
Initial sample | 1,331 Chinese ancestry cases |
Replication sample | 1,062 Chinese ancestry individuals |
Region | 18q12.2 |
Chromosome id | chr18 |
Chromosome position | 36114157 |
Reported gene | SLC39A6 |
Mapped gene | SLC39A6 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 25800 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs1050631-T |
SNPs | rs1050631 |
Merged | 0 |
SNP id current | 1050631 |
Context | synonymous_variant |
Intergenic | 0 |
Allele frequency | 0.18 |
P value | 0.00000004 |
Pvalue mlog | 7.39794000867203 |
P value text | |
Or beta | 1.3 |
%95 Ci | [1.19-1.43] |
Platform | Affymetrix [665999] |
CNV | N |
Mapped trait | squamous cell carcinoma, esophageal carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000707, http://www.ebi.ac.uk/efo/EFO_0002916 |
Study accession | GCST002010 |