SNP Detail For rs1050631
1.Mapping Information
Human SNP ID rs1050631
Human chromosome chr18
Human SNP position 36114157
Pig chromosome chr6
Pig SNP position 112392870
2.Annotation Information
PubMed ID23644492
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23644492
StudyGenome-wide association study identifies common variants in SLC39A6 associated with length of survival in esophageal squamous-cell carcinoma.
Disease/TraitEsophageal squamous cell cancer (length of survival)
Initial sample1,331 Chinese ancestry cases
Replication sample1,062 Chinese ancestry individuals
Region18q12.2
Chromosome idchr18
Chromosome position36114157
Reported geneSLC39A6
Mapped geneSLC39A6
Upstream gene id
Downstream gene id
SNP gene ids25800
Upstream gene distance
Downstream gene distance
SNP risk allelers1050631-T
SNPsrs1050631
Merged0
SNP id current1050631
Contextsynonymous_variant
Intergenic0
Allele frequency0.18
P value0.00000004
Pvalue mlog7.39794000867203
P value text
Or beta1.3
%95 Ci[1.19-1.43]
PlatformAffymetrix [665999]
CNVN
Mapped traitsquamous cell carcinoma, esophageal carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000707, http://www.ebi.ac.uk/efo/EFO_0002916
Study accessionGCST002010