Human SNP ID | rs10503733 |
---|---|
Human chromosome | chr8 |
Human SNP position | 23676505 |
Pig chromosome | chr14 |
Pig SNP position | 8622803 |
PubMed ID | 22923026 |
---|---|
Journal | Cancer Epidemiol Biomarkers Prev |
Link | www.ncbi.nlm.nih.gov/pubmed/22923026 |
Study | Evaluating genetic risk for prostate cancer among Japanese and Latinos. |
Disease/Trait | Prostate cancer |
Initial sample | 1,033 Japanese ancestry cases, 1,042 Japanese ancestry controls, 1,043 Latino cases, 1,057 Latino controls |
Replication sample | 1,583 Japanese ancestry cases, 3,386 Japanese ancestry controls, 1,854 European ancestry cases, 3,748 European ancestry controls |
Region | 8p21.2 |
Chromosome id | chr8 |
Chromosome position | 23676505 |
Reported gene | NR |
Mapped gene | SLC25A37 - NKX3-1 |
Upstream gene id | 51312 |
Downstream gene id | 4824 |
SNP gene ids | |
Upstream gene distance | 103955 |
Downstream gene distance | 2188 |
SNP risk allele | rs10503733-T |
SNPs | rs10503733 |
Merged | 0 |
SNP id current | 10503733 |
Context | downstream_gene_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 0.00000008 |
Pvalue mlog | 7.09691001300805 |
P value text | (Japanese and Latin American) |
Or beta | 1.29 |
%95 Ci | NR |
Platform | Illumina [528023] |
CNV | N |
Mapped trait | prostate carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001663 |
Study accession | GCST001646 |