SNP Detail For rs10500569
1.Mapping Information
Human SNP ID rs10500569
Human chromosome chr16
Human SNP position 72722202
Pig chromosome chr6
Pig SNP position 14965584
2.Annotation Information
PubMed ID22916037
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/22916037
StudyNovel Loci for metabolic networks and multi-tissue expression studies reveal genes for atherosclerosis.
Disease/TraitMetabolite levels
Initial sample6,608 European ancestry individuals
Replication sampleNA
Region16q22.2
Chromosome idchr16
Chromosome position72722202
Reported geneZFHX3
Mapped geneLINC01572 - KRT18P18
Upstream gene id101927957
Downstream gene id342374
SNP gene ids
Upstream gene distance57193
Downstream gene distance6401
SNP risk allelers10500569-?
SNPsrs10500569
Merged0
SNP id current10500569
Contextintron_variant
Intergenic1
Allele frequency0.23
P value0.000000000007
Pvalue mlog11.1549019599857
P value text
Or beta
%95 Ci
PlatformIllumina [~ 2000000] (imputed)
CNVN
Mapped traitcoronary artery calcification
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004723
Study accessionGCST001639