SNP Detail For rs10499559
1.Mapping Information
Human SNP ID rs10499559
Human chromosome chr7
Human SNP position 22069841
Pig chromosome chr9
Pig SNP position 100364704
2.Annotation Information
PubMed ID17903292
JournalBMC Med Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/17903292
StudyA genome-wide association for kidney function and endocrine-related traits in the NHLBI__s Framingham Heart Study.
Disease/TraitThyroid stimulating hormone
Initial sample883 individuals
Replication sampleNA
Region7p15.3
Chromosome idchr7
Chromosome position22069841
Reported geneRAPGEF5
Mapped geneCDCA7L - LOC102724143
Upstream gene id55536
Downstream gene id102724143
SNP gene ids
Upstream gene distance123917
Downstream gene distance40670
SNP risk allelers10499559-?
SNPsrs10499559
Merged0
SNP id current10499559
Contextintergenic_variant
Intergenic1
Allele frequencyNR
P value0.000008
Pvalue mlog5.09691001300805
P value text
Or beta
%95 Ci
PlatformAffymetrix [70897]
CNVN
Mapped traitthyroid stimulating hormone measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004748
Study accessionGCST000100