SNP Detail For rs10499197
1.Mapping Information
Human SNP ID rs10499197
Human chromosome chr6
Human SNP position 137811379
Pig chromosome chr1
Pig SNP position 29891317
2.Annotation Information
PubMed ID23740937
JournalHum Mol Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23740937
StudyA systemic sclerosis and systemic lupus erythematosus pan-meta-GWAS reveals new shared susceptibility loci.
Disease/TraitSystemic lupus erythematosus and Systemic sclerosis
Initial sampleup to 2,761 European ancestry systemic sclerosis cases, 769 European ancestry systemic lupus erythematosus cases, 7,381 European ancestry controls
Replication sampleup to 1,578 European ancestry systemic sclerosis cases, 1,727 European ancestry systemic lupus erythematosus cases, 6,893 European ancestry controls
Region6q23.3
Chromosome idchr6
Chromosome position137811379
Reported geneTNFAIP3
Mapped geneLOC100507406 - LOC100130476
Upstream gene id100507406
Downstream gene id100130476
SNP gene ids
Upstream gene distance72342
Downstream gene distance12290
SNP risk allelers10499197-?
SNPsrs10499197
Merged0
SNP id current10499197
Contextregulatory_region_variant
Intergenic1
Allele frequencyNR
P value0.000000002
Pvalue mlog8.69897000433601
P value text
Or beta1.638
%95 Ci[NR]
PlatformIllumina [NR]
CNVN
Mapped traitsystemic scleroderma, systemic lupus erythematosus
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000717, http://www.ebi.ac.uk/efo/EFO_0002690
Study accessionGCST002069