Human SNP ID | rs10499197 |
---|---|
Human chromosome | chr6 |
Human SNP position | 137811379 |
Pig chromosome | chr1 |
Pig SNP position | 29891317 |
PubMed ID | 23740937 |
---|---|
Journal | Hum Mol Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23740937 |
Study | A systemic sclerosis and systemic lupus erythematosus pan-meta-GWAS reveals new shared susceptibility loci. |
Disease/Trait | Systemic lupus erythematosus and Systemic sclerosis |
Initial sample | up to 2,761 European ancestry systemic sclerosis cases, 769 European ancestry systemic lupus erythematosus cases, 7,381 European ancestry controls |
Replication sample | up to 1,578 European ancestry systemic sclerosis cases, 1,727 European ancestry systemic lupus erythematosus cases, 6,893 European ancestry controls |
Region | 6q23.3 |
Chromosome id | chr6 |
Chromosome position | 137811379 |
Reported gene | TNFAIP3 |
Mapped gene | LOC100507406 - LOC100130476 |
Upstream gene id | 100507406 |
Downstream gene id | 100130476 |
SNP gene ids | |
Upstream gene distance | 72342 |
Downstream gene distance | 12290 |
SNP risk allele | rs10499197-? |
SNPs | rs10499197 |
Merged | 0 |
SNP id current | 10499197 |
Context | regulatory_region_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 0.000000002 |
Pvalue mlog | 8.69897000433601 |
P value text | |
Or beta | 1.638 |
%95 Ci | [NR] |
Platform | Illumina [NR] |
CNV | N |
Mapped trait | systemic scleroderma, systemic lupus erythematosus |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000717, http://www.ebi.ac.uk/efo/EFO_0002690 |
Study accession | GCST002069 |