Human SNP ID | rs10499194 |
---|---|
Human chromosome | chr6 |
Human SNP position | 137681500 |
Pig chromosome | chr1 |
Pig SNP position | 30015299 |
PubMed ID | 17982456 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/17982456 |
Study | Two independent alleles at 6q23 associated with risk of rheumatoid arthritis. |
Disease/Trait | Rheumatoid arthritis |
Initial sample | 397 European ancestry cases, 1,211 controls |
Replication sample | 1,408 cases, 2,426 controls, 875 European ancestry cases, 832 European ancestry controls |
Region | 6q23.3 |
Chromosome id | chr6 |
Chromosome position | 137681500 |
Reported gene | TNFAIP3, OLIG3 |
Mapped gene | LOC102723649 - LOC442263 |
Upstream gene id | 102723649 |
Downstream gene id | 442263 |
SNP gene ids | |
Upstream gene distance | 6946 |
Downstream gene distance | 24323 |
SNP risk allele | rs10499194-C |
SNPs | rs10499194 |
Merged | 0 |
SNP id current | 10499194 |
Context | intron_variant |
Intergenic | 1 |
Allele frequency | 0.71 |
P value | 0.000000001 |
Pvalue mlog | 9 |
P value text | |
Or beta | 1.33 |
%95 Ci | [1.15-1.52] |
Platform | Affymetrix [79853] |
CNV | N |
Mapped trait | rheumatoid arthritis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000685 |
Study accession | GCST000122 |