SNP Detail For rs10499194
1.Mapping Information
Human SNP ID rs10499194
Human chromosome chr6
Human SNP position 137681500
Pig chromosome chr1
Pig SNP position 30015299
2.Annotation Information
PubMed ID17982456
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/17982456
StudyTwo independent alleles at 6q23 associated with risk of rheumatoid arthritis.
Disease/TraitRheumatoid arthritis
Initial sample397 European ancestry cases, 1,211 controls
Replication sample1,408 cases, 2,426 controls, 875 European ancestry cases, 832 European ancestry controls
Region6q23.3
Chromosome idchr6
Chromosome position137681500
Reported geneTNFAIP3, OLIG3
Mapped geneLOC102723649 - LOC442263
Upstream gene id102723649
Downstream gene id442263
SNP gene ids
Upstream gene distance6946
Downstream gene distance24323
SNP risk allelers10499194-C
SNPsrs10499194
Merged0
SNP id current10499194
Contextintron_variant
Intergenic1
Allele frequency0.71
P value0.000000001
Pvalue mlog9
P value text
Or beta1.33
%95 Ci[1.15-1.52]
PlatformAffymetrix [79853]
CNVN
Mapped traitrheumatoid arthritis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000685
Study accessionGCST000122