SNP Detail For rs10499138
1.Mapping Information
Human SNP ID rs10499138
Human chromosome chr6
Human SNP position 128171037
Pig chromosome chr1
Pig SNP position 38627566
2.Annotation Information
PubMed ID20068591
JournalEur J Hum Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/20068591
StudyA genome-wide association study for age-related hearing impairment in the Saami.
Disease/TraitHearing impairment
Initial sample347 Finnish Saami individuals
Replication sampleNA
Region6q22.33
Chromosome idchr6
Chromosome position128171037
Reported geneNR
Mapped genePTPRK
Upstream gene id
Downstream gene id
SNP gene ids5796
Upstream gene distance
Downstream gene distance
SNP risk allelers10499138-A
SNPsrs10499138
Merged0
SNP id current10499138
Contextintron_variant
Intergenic0
Allele frequency0.25
P value0.000002
Pvalue mlog5.69897000433601
P value text(PC2)
Or beta
%95 Ci
PlatformAffymetrix [83381]
CNVN
Mapped traithearing loss
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004238
Study accessionGCST000566