SNP Detail For rs10497394
1.Mapping Information
Human SNP ID rs10497394
Human chromosome chr2
Human SNP position 173432931
Pig chromosome chr15
Pig SNP position 88821654
2.Annotation Information
PubMed ID23974705
JournalJ Assoc Res Otolaryngol
Linkwww.ncbi.nlm.nih.gov/pubmed/23974705
StudyA genome-wide association study of chronic otitis media with effusion and recurrent otitis media identifies a novel susceptibility locus on chromosome 2.
Disease/TraitOtitis media (chronic/recurrent)
Initial sample373 cases and 229 controls from 143 families
Replication sample932 European ancestry cases and 652 European ancestry controls from 441 families
Region2q31.1
Chromosome idchr2
Chromosome position173432931
Reported geneCDCA7, SP3
Mapped geneCDCA7 - LOC105373744
Upstream gene id83879
Downstream gene id105373744
SNP gene ids
Upstream gene distance63941
Downstream gene distance2544
SNP risk allelers10497394-G
SNPsrs10497394
Merged0
SNP id current10497394
Contextupstream_gene_variant
Intergenic1
Allele frequency0.637
P value0.00000002
Pvalue mlog7.69897000433601
P value text
Or beta1.51
%95 Ci[1.30-1.70]
PlatformIllumina [324748]
CNVN
Mapped traitOtitis media
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004992
Study accessionGCST002148