Human SNP ID | rs10497394 |
---|---|
Human chromosome | chr2 |
Human SNP position | 173432931 |
Pig chromosome | chr15 |
Pig SNP position | 88821654 |
PubMed ID | 23974705 |
---|---|
Journal | J Assoc Res Otolaryngol |
Link | www.ncbi.nlm.nih.gov/pubmed/23974705 |
Study | A genome-wide association study of chronic otitis media with effusion and recurrent otitis media identifies a novel susceptibility locus on chromosome 2. |
Disease/Trait | Otitis media (chronic/recurrent) |
Initial sample | 373 cases and 229 controls from 143 families |
Replication sample | 932 European ancestry cases and 652 European ancestry controls from 441 families |
Region | 2q31.1 |
Chromosome id | chr2 |
Chromosome position | 173432931 |
Reported gene | CDCA7, SP3 |
Mapped gene | CDCA7 - LOC105373744 |
Upstream gene id | 83879 |
Downstream gene id | 105373744 |
SNP gene ids | |
Upstream gene distance | 63941 |
Downstream gene distance | 2544 |
SNP risk allele | rs10497394-G |
SNPs | rs10497394 |
Merged | 0 |
SNP id current | 10497394 |
Context | upstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.637 |
P value | 0.00000002 |
Pvalue mlog | 7.69897000433601 |
P value text | |
Or beta | 1.51 |
%95 Ci | [1.30-1.70] |
Platform | Illumina [324748] |
CNV | N |
Mapped trait | Otitis media |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004992 |
Study accession | GCST002148 |