Human SNP ID | rs10495332 |
---|---|
Human chromosome | chr1 |
Human SNP position | 232620280 |
Pig chromosome | chr14 |
Pig SNP position | 62323792 |
PubMed ID | 24556642 |
---|---|
Journal | Caries Res |
Link | www.ncbi.nlm.nih.gov/pubmed/24556642 |
Study | Genome-wide association study of primary dentition pit-and-fissure and smooth surface caries. |
Disease/Trait | Smooth-surface caries |
Initial sample | 1006 European ancestry individuals |
Replication sample | NA |
Region | 1q42.2 |
Chromosome id | chr1 |
Chromosome position | 232620280 |
Reported gene | SIPA1L2 |
Mapped gene | SIPA1L2 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 57568 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs10495332-T |
SNPs | rs10495332 |
Merged | 0 |
SNP id current | 10495332 |
Context | regulatory_region_variant |
Intergenic | 0 |
Allele frequency | 0.0227 |
P value | 0.000008 |
Pvalue mlog | 5.09691001300805 |
P value text | |
Or beta | 4.119 |
%95 Ci | [NR] unit decrease |
Platform | Illumina [1216189] (imputed) |
CNV | N |
Mapped trait | smooth surface dental caries |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0006339 |
Study accession | GCST002361 |