SNP Detail For rs10493631
1.Mapping Information
Human SNP ID rs10493631
Human chromosome chr1
Human SNP position 80012195
Pig chromosome chr6
Pig SNP position 123772058
2.Annotation Information
PubMed ID23251661
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/23251661
StudyNovel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.
Disease/TraitObesity-related traits
Initial sample815 Hispanic children from 263 families
Replication sampleNA
Region1p31.1
Chromosome idchr1
Chromosome position80012195
Reported geneHMGB1P18
Mapped geneLOC105378810 - COX6A1P1
Upstream gene id105378810
Downstream gene id1338
SNP gene ids
Upstream gene distance606775
Downstream gene distance483694
SNP risk allelers10493631-G
SNPsrs10493631
Merged0
SNP id current10493631
Contextintergenic_variant
Intergenic1
Allele frequency0.306
P value0.000005
Pvalue mlog5.30102999566398
P value text(Sleep duration )
Or beta0.04
%95 Ci[NR] min/d increase
PlatformIllumina [899892]
CNVN
Mapped traitsleep measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004870
Study accessionGCST001762