Human SNP ID | rs1049110 |
---|---|
Human chromosome | chr6 |
Human SNP position | 32759026 |
Pig chromosome | chr7 |
Pig SNP position | 29244463 |
PubMed ID | 23382691 |
---|---|
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23382691 |
Study | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. |
Disease/Trait | IgG glycosylation |
Initial sample | 2,247 European ancestry individuals |
Replication sample | NA |
Region | 6p21.32 |
Chromosome id | chr6 |
Chromosome position | 32759026 |
Reported gene | HLA-DQA2, HLA-DQB2 |
Mapped gene | HLA-DQB2 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 3120 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs1049110-C |
SNPs | rs1049110 |
Merged | 0 |
SNP id current | 1049110 |
Context | missense_variant |
Intergenic | 0 |
Allele frequency | 0.34601888034188 |
P value | 0.00000004 |
Pvalue mlog | 7.39794000867203 |
P value text | (IGP2) |
Or beta | 0.1853 |
%95 Ci | [0.12-0.25] unit increase |
Platform | Illumina [~ 2500000] (imputed) |
CNV | N |
Mapped trait | serum IgG glycosylation measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005193 |
Study accession | GCST001848 |
PubMed ID | 23382691 |
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23382691 |
Study | Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. |
Disease/Trait | IgG glycosylation |
Initial sample | 2,247 European ancestry individuals |
Replication sample | NA |
Region | 6p21.32 |
Chromosome id | chr6 |
Chromosome position | 32759026 |
Reported gene | HLA-DQA2, HLA-DQB2 |
Mapped gene | HLA-DQB2 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 3120 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs1049110-C |
SNPs | rs1049110 |
Merged | 0 |
SNP id current | 1049110 |
Context | missense_variant |
Intergenic | 0 |
Allele frequency | 0.346381764494382 |
P value | 0.00000002 |
Pvalue mlog | 7.69897000433601 |
P value text | (IGP42) |
Or beta | 0.1909 |
%95 Ci | [0.12-0.26] unit increase |
Platform | Illumina [~ 2500000] (imputed) |
CNV | N |
Mapped trait | serum IgG glycosylation measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005193 |
Study accession | GCST001848 |